You are querying gene by "AT5G67580".

Locus: AT5G67580 Alias: ATTRB2

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
ethyleneGeneOntology - response to ethylene stimulus 16463103
auxinGeneOntology - response to auxin stimulus 16463103
abscisic acidGeneOntology - response to abscisic acid stimulus 16463103
gibberellinGeneOntology - response to gibberellin stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT5G67580 | Chromosome: 5 | Strand: -
Description response to abscisic acid stimulus
Alias
ATTRB2( alias )
TRB2( alias )
Gene model
AT5G67580.1 | From: 26972361 | To: 26974969
AT5G67580.2 | From: 26972361 | To: 26974868
Sequence
AT5G67580.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G67580.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
nucleosome PMID:
biological_process
response to auxin stimulus PMID: 16463103
response to jasmonic acid stimulus PMID: 16463103
response to gibberellin stimulus PMID: 16463103
response to ethylene stimulus PMID: 16463103
response to abscisic acid stimulus PMID: 16463103
response to salicylic acid stimulus PMID: 16463103
response to cadmium ion PMID: 16463103
response to salt stress PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G67580.1 
length: 1862 
miRNA : ath-miR156h
length: 20 
 
mfe: -27.3 kcal/mol 
p-value: 0.002878 
 
position  1307 
target 5' C              G    G 
           UGCUCUCUUUUUUU GUUA  
           ACGAGAGAAAGAAG CAGU  
miRNA  3' C              A      
 
 
target: AT5G67580.1 
length: 1862 
miRNA : ath-miR780.2
length: 21 
 
mfe: -24.3 kcal/mol 
p-value: 0.022446 
 
position  1087 
target 5' C   U           A    C 
           UGC CAGAUAUUUGC AAGG  
           ACG GUCUAUAAGUG UUCU  
miRNA  3' U               C    U 
 
 
target: AT5G67580.2 
length: 1720 
miRNA : ath-miR156h
length: 20 
 
mfe: -27.3 kcal/mol 
p-value: 0.002620 
 
position  1165 
target 5' C              G    G 
           UGCUCUCUUUUUUU GUUA  
           ACGAGAGAAAGAAG CAGU  
miRNA  3' C              A      
 
 
target: AT5G67580.2 
length: 1720 
miRNA : ath-miR780.2
length: 21 
 
mfe: -24.3 kcal/mol 
p-value: 0.020346 
 
position  945 
target 5' C   U           A    C 
           UGC CAGAUAUUUGC AAGG  
           ACG GUCUAUAAGUG UUCU  
miRNA  3' U               C    U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_58769
AccessionTaxon
NP_190554Arabidopsis thaliana
NP_201559 ( AT5G67580 )Arabidopsis thaliana
NP_851286Arabidopsis thaliana
29661.m000926Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.10.607.999991458766982E-14168IPR012287Homeodomain-related
PROSITEPS512940.0161IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SuperFamilySSF466891.4E-8168IPR009057Homeodomain-like
SMARTSM007172.599999467189946E-7459IPR001005SANT, DNA-binding
PfamPF002491.999999999999999E-7555IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.101.6000006502252768E-6116200IPR011991Winged helix-turn-helix transcription repressor DNA-binding
SMARTSM005261.2000011745813376E-11119184IPR005818Histone H1/H5
PfamPF005385.700000000000001E-4125182IPR005818Histone H1/H5