You are querying gene by "AT5G66700".

Locus: AT5G66700 Alias: ATHB53

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 15567172

Basic gene information ( show / hide contents )

Locus AT5G66700 | Chromosome: 5 | Strand: +
Description response to auxin stimulus
Alias
ATHB53( alias )
HB-8( alias )
HB53( alias )
Gene model
AT5G66700.1 | From: 26651546 | To: 26653111
Sequence
AT5G66700.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 15567172
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
response to auxin stimulus PMID: 15567172
regulation of transcription, DNA-dependent PMID:
root development PMID: 15567172
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G66700.1 
length: 896 
miRNA : ath-miR773
length: 21 
 
mfe: -25.1 kcal/mol 
p-value: 0.016720 
 
position  353 
target 5' C      U         U    G 
           GAG CA AAGCUGGAG CAGG  
           CUC GU UUCGACCUU GUUU  
miRNA  3'     U  U         C      
 
 
target: AT5G66700.1 
length: 896 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.010104 
 
position  452 
target 5' U                  A  G 
           UGGAA GAACAAGAAACU GA  
           ACUUU CUUGUUCUUUGA CU  
miRNA  3'       G               A 
 
 
target: AT5G66700.1 
length: 896 
miRNA : ath-miR844*
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.010909 
 
position  746 
target 5' G  G  U              U 
           GA UA UGGGAUGGUUUGUA  
           UU AU AUUCUACCGAAUAU  
miRNA  3'    G  C              U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_43223
AccessionTaxon
NP_201471 ( AT5G66700 )Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.10.602.299999356653938E-1335131IPR012287Homeodomain-related
SuperFamilySSF466891.2E-1667141IPR009057Homeodomain-like
SMARTSM003891.6000024069599662E-1769130IPR001356Homeobox
PROSITEPS500710.071126IPR001356Homeobox
PfamPF000464.099999999999995E-1472125IPR001356Homeobox
PRINTSPR000312.2999993566538005E-597106IPR000047Helix-turn-helix motif, lambda-like repressor
PROSITEPS000270.0101124IPR017970Homeobox, conserved site
PRINTSPR000312.2999993566538005E-5106122IPR000047Helix-turn-helix motif, lambda-like repressor