You are querying gene by "AT5G66400".

Locus: AT5G66400 Alias: ATDI8

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 1463831

Basic gene information ( show / hide contents )

Locus AT5G66400 | Chromosome: 5 | Strand: -
Description ARABIDOPSIS THALIANA DROUGHT-INDUCED 8 RESPONSIVE TO ABA 18; Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments.
Alias
ATDI8( alias )
RAB18( alias )
Gene model
AT5G66400.1 | From: 26535523 | To: 26536468
AT5G66400.2 | From: 26535503 | To: 26536468
Sequence
AT5G66400.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G66400.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
response to water deprivation PMID: 7823904
response to stress PMID: 7948863
response to 1-Aminocyclopropane-1-carboxylic Acid PMID: 16024687
response to abscisic acid stimulus PMID: 1463831
cold acclimation PMID: 15356392
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G66400.1 
length: 864 
miRNA : ath-miR161.2
length: 21 
 
mfe: -22.2 kcal/mol 
p-value: 0.009970 
 
position  704 
target 5' C      A            U 
           AGUCGC UUCGGU CGUUG  
           UCAGUG AAGUUA GUAAC  
miRNA  3' A      A      C     U 
 
 
target: AT5G66400.1 
length: 864 
miRNA : ath-miR167d
length: 22 
 
mfe: -30.1 kcal/mol 
p-value: 0.002936 
 
position  555 
target 5' U      A G            A  G 
           CCGGAU U AUGCUGGUGGCU CG  
           GGUCUA G UACGACCGUCGA GU  
miRNA  3'                       A    
 
 
target: AT5G66400.1 
length: 864 
miRNA : ath-miR826
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.009065 
 
position  299 
target 5' A    G A        G      A 
           UACG A CCGGGACC GGACUG  
           GUGC U GGUUUUGG CCUGAU  
miRNA  3'      A A                 
 
 
target: AT5G66400.2 
length: 881 
miRNA : ath-miR161.2
length: 21 
 
mfe: -22.2 kcal/mol 
p-value: 0.010228 
 
position  701 
target 5' C      A            U 
           AGUCGC UUCGGU CGUUG  
           UCAGUG AAGUUA GUAAC  
miRNA  3' A      A      C     U 
 
 
target: AT5G66400.2 
length: 881 
miRNA : ath-miR167d
length: 22 
 
mfe: -30.1 kcal/mol 
p-value: 0.003015 
 
position  552 
target 5' U      A G            A  G 
           CCGGAU U AUGCUGGUGGCU CG  
           GGUCUA G UACGACCGUCGA GU  
miRNA  3'                       A    
 
 
target: AT5G66400.2 
length: 881 
miRNA : ath-miR826
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.009308 
 
position  299 
target 5' A    G A        G      A 
           UACG A CCGGGACC GGACUG  
           GUGC U GGUUUUGG CCUGAU  
miRNA  3'      A A                 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_30316
AccessionTaxon
NP_001032162Arabidopsis thaliana
NP_201441 ( AT5G66400 )Arabidopsis thaliana
NP_001067838Oryza sativa Japonica Group
NP_001067841Oryza sativa Japonica Group
NP_001067842Oryza sativa Japonica Group
NP_001067843Oryza sativa Japonica Group
NP_001067844Oryza sativa Japonica Group
NP_190667Arabidopsis thaliana
29634.m002070Ricinus communis
29634.m002071Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF002572.5e-3122184IPR000167Dehydrin
PfamPF002571.3000000000000006E-2622183IPR000167Dehydrin
PROSITEPS00315NA113128IPR000167Dehydrin
PROSITEPS008230.0132139IPR000167Dehydrin
PROSITEPS00823NA133140IPR000167Dehydrin
PROSITEPS008230.0175182IPR000167Dehydrin
PROSITEPS00823NA176183IPR000167Dehydrin