You are querying gene by "AT5G66350".

Locus: AT5G66350 Alias: SHI

Hormone Evidence Function category Gene Description PMID
gibberellinGeneOntology - gibberellic acid mediated signaling 10368174

Basic gene information ( show / hide contents )

Locus AT5G66350 | Chromosome: 5 | Strand: -
Description gibberellic acid mediated signaling
Alias
SHI( alias )
Gene model
AT5G66350.1 | From: 26521693 | To: 26523795
Sequence
AT5G66350.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 10368174
protein heterodimerization activity PMID: 16740146
transcription factor activity PMID: 10368174
cellular_component
nucleus PMID: 10368174
biological_process
response to gibberellin stimulus PMID: 10368174
gibberellic acid mediated signaling PMID: 10368174
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G66350.1 
length: 1669 
miRNA : ath-miR414
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.003958 
 
position  732 
target 5' C       C U      U     G 
           GGCGGUG G UGAUGA GAUGA  
           CUGCUAC U ACUACU CUACU  
miRNA  3' A                U       
 
 
target: AT5G66350.1 
length: 1669 
miRNA : ath-miR779.1
length: 21 
 
mfe: -26.3 kcal/mol 
p-value: 0.017567 
 
position  32 
target 5' G              U      C 
           GUGA UGGCGGCGU GCAGAG  
           UACU GUCGUUGUA CGUCUU  
miRNA  3'      C         U        
 
 
target: AT5G66350.1 
length: 1669 
miRNA : ath-miR854a
length: 21 
 
mfe: -28.4 kcal/mol 
p-value: 0.020491 
 
position  89 
target 5' U   U   U            C  U 
           CUC CUC CUCUCUAUCC C UC  
           GAG GAG GAGGGAUAGG G AG  
miRNA  3'                    A U    
 
 
target: AT5G66350.1 
length: 1669 
miRNA : ath-miR854b
length: 21 
 
mfe: -28.4 kcal/mol 
p-value: 0.018972 
 
position  89 
target 5' U   U   U            C  U 
           CUC CUC CUCUCUAUCC C UC  
           GAG GAG GAGGGAUAGG G AG  
miRNA  3'                    A U    
 
 
target: AT5G66350.1 
length: 1669 
miRNA : ath-miR854c
length: 21 
 
mfe: -28.4 kcal/mol 
p-value: 0.020472 
 
position  89 
target 5' U   U   U            C  U 
           CUC CUC CUCUCUAUCC C UC  
           GAG GAG GAGGGAUAGG G AG  
miRNA  3'                    A U    
 
 
target: AT5G66350.1 
length: 1669 
miRNA : ath-miR854d
length: 21 
 
mfe: -28.4 kcal/mol 
p-value: 0.019271 
 
position  89 
target 5' U   U   U            C  U 
           CUC CUC CUCUCUAUCC C UC  
           GAG GAG GAGGGAUAGG G AG  
miRNA  3'                    A U    
 
 
target: AT5G66350.1 
length: 1669 
miRNA : ath-miR854e
length: 21 
 
mfe: -28.4 kcal/mol 
p-value: 0.021194 
 
position  89 
target 5' U   U   U            C  U 
           CUC CUC CUCUCUAUCC C UC  
           GAG GAG GAGGGAUAGG G AG  
miRNA  3'                    A U    
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_50604
AccessionTaxon
NP_190675Arabidopsis thaliana
NP_201436 ( AT5G66350 )Arabidopsis thaliana
NP_001058559Oryza sativa Japonica Group
NP_001063755Oryza sativa Japonica Group
29279.m000131Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF051425.300000000000011E-65115263IPR007818Protein of unknown function DUF702
TIGRFAMTIGR016232.800005042611E-19119161IPR006510Zinc finger, Lateral Root Primordium type 1
TIGRFAMTIGR016245.899988094056904E-26213261IPR006511Lateral Root Primordium type 1, C-terminal