You are querying gene by "AT5G65940".

Locus: AT5G65940 Alias: chy1

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 11404361

Basic gene information ( show / hide contents )

Locus AT5G65940 | Chromosome: 5 | Strand: -
Description response to auxin stimulus
Alias
chy1( alias )
Gene model
AT5G65940.1 | From: 26393836 | To: 26396461
AT5G65940.2 | From: 26393900 | To: 26396461
AT5G65940.3 | From: 26393900 | To: 26396461
Sequence
AT5G65940.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G65940.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G65940.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
3-hydroxyisobutyryl-CoA hydrolase activity PMID: 11404361
biological_process
valine catabolic process PMID: 11404361
response to auxin stimulus PMID: 11404361
fatty acid beta-oxidation PMID: 11404361
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G65940.1 
length: 1431 
miRNA : ath-miR160a
length: 21 
 
mfe: -36.5 kcal/mol 
p-value: 0.000713 
 
position  945 
target 5' G   G U          G     G 
           GGC A UGCAGGGGGU GGGCA  
           CCG U AUGUCCCUCG UCCGU  
miRNA  3' A                G       
 
 
target: AT5G65940.1 
length: 1431 
miRNA : ath-miR160b
length: 21 
 
mfe: -36.5 kcal/mol 
p-value: 0.000838 
 
position  945 
target 5' G   G U          G     G 
           GGC A UGCAGGGGGU GGGCA  
           CCG U AUGUCCCUCG UCCGU  
miRNA  3' A                G       
 
 
target: AT5G65940.1 
length: 1431 
miRNA : ath-miR160c
length: 21 
 
mfe: -36.5 kcal/mol 
p-value: 0.001534 
 
position  945 
target 5' G   G U          G     G 
           GGC A UGCAGGGGGU GGGCA  
           CCG U AUGUCCCUCG UCCGU  
miRNA  3' A                G       
 
 
target: AT5G65940.2 
length: 1443 
miRNA : ath-miR160a
length: 21 
 
mfe: -36.5 kcal/mol 
p-value: 0.000722 
 
position  945 
target 5' G   G U          G     G 
           GGC A UGCAGGGGGU GGGCA  
           CCG U AUGUCCCUCG UCCGU  
miRNA  3' A                G       
 
 
target: AT5G65940.2 
length: 1443 
miRNA : ath-miR160b
length: 21 
 
mfe: -36.5 kcal/mol 
p-value: 0.000848 
 
position  945 
target 5' G   G U          G     G 
           GGC A UGCAGGGGGU GGGCA  
           CCG U AUGUCCCUCG UCCGU  
miRNA  3' A                G       
 
 
target: AT5G65940.2 
length: 1443 
miRNA : ath-miR160c
length: 21 
 
mfe: -36.5 kcal/mol 
p-value: 0.001550 
 
position  945 
target 5' G   G U          G     G 
           GGC A UGCAGGGGGU GGGCA  
           CCG U AUGUCCCUCG UCCGU  
miRNA  3' A                G       
 
 
target: AT5G65940.3 
length: 1356 
miRNA : ath-miR160a
length: 21 
 
mfe: -36.5 kcal/mol 
p-value: 0.000659 
 
position  945 
target 5' G   G U          G     G 
           GGC A UGCAGGGGGU GGGCA  
           CCG U AUGUCCCUCG UCCGU  
miRNA  3' A                G       
 
 
target: AT5G65940.3 
length: 1356 
miRNA : ath-miR160b
length: 21 
 
mfe: -36.5 kcal/mol 
p-value: 0.000776 
 
position  945 
target 5' G   G U          G     G 
           GGC A UGCAGGGGGU GGGCA  
           CCG U AUGUCCCUCG UCCGU  
miRNA  3' A                G       
 
 
target: AT5G65940.3 
length: 1356 
miRNA : ath-miR160c
length: 21 
 
mfe: -36.5 kcal/mol 
p-value: 0.001436 
 
position  945 
target 5' G   G U          G     G 
           GGC A UGCAGGGGGU GGGCA  
           CCG U AUGUCCCUCG UCCGU  
miRNA  3' A                G       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11220
AccessionTaxon
NP_001032155Arabidopsis thaliana
NP_001078804Arabidopsis thaliana
NP_180623Arabidopsis thaliana
NP_180624Arabidopsis thaliana
NP_201395 ( AT5G65940 )Arabidopsis thaliana
151307Chlamydomonas reinhardtii
NP_001066529Oryza sativa Japonica Group
gw1.14.00.312.1Ostreococcus tauri
e_gw1.83.68.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_130100Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3700033Physcomitrella patens subsp. patens
27473.m000042Ricinus communis
32596.m000017Ricinus communis
29709.m001229Ricinus communis
0000770001Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF003782.9e-2622191IPR001753Crotonase, core
PfamPF003781.6000000000000008E-2322191IPR001753Crotonase, core
PfamPF003781.7999999999999996E-2322191IPR001753Crotonase, core