You are querying gene by "AT5G65310".

Locus: AT5G65310 Alias: ATHB-5

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - abscisic acid mediated signaling 12678559

Basic gene information ( show / hide contents )

Locus AT5G65310 | Chromosome: 5 | Strand: -
Description abscisic acid mediated signaling
Alias
ATHB-5( alias )
ATHB5( alias )
Gene model
AT5G65310.1 | From: 26119186 | To: 26121840
AT5G65310.2 | From: 26119165 | To: 26121137
Sequence
AT5G65310.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G65310.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 11247607
transcription activator activity PMID: 16055682
transcription factor activity PMID: 12678559
cellular_component
nucleus PMID:
biological_process
abscisic acid mediated signaling PMID: 12678559
regulation of transcription, DNA-dependent PMID:
regulation of abscisic acid mediated signaling PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G65310.1 
length: 1833 
miRNA : ath-miR396b
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.064918 
 
position  1365 
target 5' A   C G        A       A 
           AAG U AAGGGGGU UGUGGAA  
           UUC A UUCUUUCG ACACCUU  
miRNA  3'     A G                  
 
 
target: AT5G65310.1 
length: 1833 
miRNA : ath-miR854a
length: 21 
 
mfe: -29.8 kcal/mol 
p-value: 0.013239 
 
position  20 
target 5' U    C          U      U 
           CUCU CCUCUCUAUC CUC UC  
           GAGG GGAGGGAUAG GAG AG  
miRNA  3'      A              U    
 
 
target: AT5G65310.1 
length: 1833 
miRNA : ath-miR854b
length: 21 
 
mfe: -29.8 kcal/mol 
p-value: 0.011292 
 
position  20 
target 5' U    C          U      U 
           CUCU CCUCUCUAUC CUC UC  
           GAGG GGAGGGAUAG GAG AG  
miRNA  3'      A              U    
 
 
target: AT5G65310.1 
length: 1833 
miRNA : ath-miR854c
length: 21 
 
mfe: -29.8 kcal/mol 
p-value: 0.012769 
 
position  20 
target 5' U    C          U      U 
           CUCU CCUCUCUAUC CUC UC  
           GAGG GGAGGGAUAG GAG AG  
miRNA  3'      A              U    
 
 
target: AT5G65310.1 
length: 1833 
miRNA : ath-miR854d
length: 21 
 
mfe: -29.8 kcal/mol 
p-value: 0.011566 
 
position  20 
target 5' U    C          U      U 
           CUCU CCUCUCUAUC CUC UC  
           GAGG GGAGGGAUAG GAG AG  
miRNA  3'      A              U    
 
 
target: AT5G65310.1 
length: 1833 
miRNA : ath-miR854e
length: 21 
 
mfe: -29.8 kcal/mol 
p-value: 0.013283 
 
position  20 
target 5' U    C          U      U 
           CUCU CCUCUCUAUC CUC UC  
           GAGG GGAGGGAUAG GAG AG  
miRNA  3'      A              U    
 
 
target: AT5G65310.2 
length: 1460 
miRNA : ath-miR396b
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.049856 
 
position  971 
target 5' A   C G        A       A 
           AAG U AAGGGGGU UGUGGAA  
           UUC A UUCUUUCG ACACCUU  
miRNA  3'     A G                  
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_15886
AccessionTaxon
NP_001048008Oryza sativa Japonica Group
NP_001061807Oryza sativa Japonica Group
NP_001049219Oryza sativa Japonica Group
NP_001064475Oryza sativa Japonica Group
NP_001063436Oryza sativa Japonica Group
NP_001062064Oryza sativa Japonica Group
e_gw1.325.18.1Physcomitrella patens subsp. patens
e_gw1.65.5.1Physcomitrella patens subsp. patens
e_gw1.96.4.1Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_143000038Physcomitrella patens subsp. patens
gw1.154.2.1Physcomitrella patens subsp. patens
29736.m002045Ricinus communis
30147.m014069Ricinus communis
gw1.28.15.1Physcomitrella patens subsp. patens
gw1.4.12.1Physcomitrella patens subsp. patens
e_gw1.34.11.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_70211Physcomitrella patens subsp. patens
gw1.34.13.1Physcomitrella patens subsp. patens
gw1.65.7.1Physcomitrella patens subsp. patens
e_gw1.31.11.1Physcomitrella patens subsp. patens
e_gw1.431.18.1Physcomitrella patens subsp. patens
estExt_fgenesh2_pm.C_1080004Physcomitrella patens subsp. patens
NP_186796Arabidopsis thaliana
29822.m003350Ricinus communis
NP_001032151Arabidopsis thaliana
NP_195716Arabidopsis thaliana
NP_201334 ( AT5G65310 )Arabidopsis thaliana
NP_565536Arabidopsis thaliana
29908.m006082Ricinus communis
gw1.77.4.1Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.10.602.2999993566539383E-1439115IPR012287Homeodomain-related
SuperFamilySSF466891.8E-1939115IPR009057Homeodomain-like
PROSITEPS500710.049109IPR001356Homeobox
SMARTSM003893.800006970935858E-1852113IPR001356Homeobox
PfamPF000462.4E-1356107IPR001356Homeobox
Gene3DG3DSA:1.10.10.602.2e-1457133IPR012287Homeodomain-related
SuperFamilySSF466891.8e-1957133IPR009057Homeodomain-like
PROSITEPS5007117.41067127IPR001356Homeobox
SMARTSM003895.3e-1870131IPR001356Homeobox
PfamPF000463.3e-1674125IPR001356Homeobox
PRINTSPR000316.9999996555882695E-68089IPR000047Helix-turn-helix motif, lambda-like repressor
PROSITEPS000270.084107IPR017970Homeobox, conserved site
PRINTSPR000316.9999996555882695E-689105IPR000047Helix-turn-helix motif, lambda-like repressor
PRINTSPR000317.8e-0698107IPR000047Helix-turn-helix motif, lambda-like repressor
PROSITEPS00027NA102125IPR017970Homeobox, conserved site
PRINTSPR000317.8e-06107123IPR000047Helix-turn-helix motif, lambda-like repressor
PfamPF021833.399999999999999E-14109151IPR003106Leucine zipper, homeobox-associated
PfamPF021834.7e-17127169IPR003106Leucine zipper, homeobox-associated