You are querying gene by "AT5G65210".

Locus: AT5G65210 Alias: TGA1

Hormone Evidence Function category Gene Description PMID
salicylic acidMutant Hormone signal transduction transcription factor 17369431

Basic gene information ( show / hide contents )

Locus AT5G65210 | Chromosome: 5 | Strand: +
Description transcription factor
Alias
TGA1( alias )
Gene model
AT5G65210.2 | From: 26075771 | To: 26078278
AT5G65210.1 | From: 26074849 | To: 26078278
AT5G65210.3 | From: 26075044 | To: 26078330
AT5G65210.4 | From: 26075768 | To: 26078330
AT5G65210.5 | From: 26075040 | To: 26078330
AT5G65210.6 | From: 26074849 | To: 26078330
Sequence
AT5G65210.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G65210.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G65210.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G65210.4 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G65210.5 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G65210.6 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 1446171
calmodulin binding PMID: 11782485
transcription factor activity PMID:
cellular_component
nucleus PMID:
biological_process
defense response to bacterium PMID: 17369431
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   salicylic acid   ]

Genotype PMID Type
tga1-1 17369431 mutant
tga1-1 tga4-1 17369431 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G65210.2 
length: 1896 
miRNA : ath-miR157a
length: 21 
 
mfe: -24.8 kcal/mol 
p-value: 0.015444 
 
position  459 
target 5' U              A     G 
           UGUUCUUUGUUUUC GUUGA  
           ACGAGAGAUAGAAG CAGUU  
miRNA  3' C              A       
 
 
target: AT5G65210.2 
length: 1896 
miRNA : ath-miR157b
length: 21 
 
mfe: -24.8 kcal/mol 
p-value: 0.015157 
 
position  459 
target 5' U              A     G 
           UGUUCUUUGUUUUC GUUGA  
           ACGAGAGAUAGAAG CAGUU  
miRNA  3' C              A       
 
 
target: AT5G65210.2 
length: 1896 
miRNA : ath-miR157c
length: 21 
 
mfe: -24.8 kcal/mol 
p-value: 0.014226 
 
position  459 
target 5' U              A     G 
           UGUUCUUUGUUUUC GUUGA  
           ACGAGAGAUAGAAG CAGUU  
miRNA  3' C              A       
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G65210AT2G14610PositivetransciptN/Amutance17369431

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_40651
AccessionTaxon
NP_001032147Arabidopsis thaliana
NP_001032148Arabidopsis thaliana
NP_001032149 ( AT5G65210 )Arabidopsis thaliana
NP_001078800Arabidopsis thaliana
NP_196565Arabidopsis thaliana
NP_201324Arabidopsis thaliana
NP_851273Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM003381.7999995165467721E-61073IPR004827Basic-leucine zipper (bZIP) transcription factor
PfamPF001703.2999999999999964E-61248IPR011616bZIP transcription factor, bZIP-1
PROSITEPS502170.01254IPR004827Basic-leucine zipper (bZIP) transcription factor
PROSITEPS000360.01732IPR004827Basic-leucine zipper (bZIP) transcription factor
SMARTSM003382.1e-0680143IPR004827Basic-leucine zipper (bZIP) transcription factor
PfamPF001705.7e-0982118IPR011616bZIP transcription factor, bZIP-1
PROSITEPS502178.77282124IPR004827Basic-leucine zipper (bZIP) transcription factor
PROSITEPS00036NA87102IPR004827Basic-leucine zipper (bZIP) transcription factor