You are querying gene by "AT5G62000".

Locus: AT5G62000 Alias: ARF1-BP

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction transcription factor 16339187
brassinosteroidMutant Hormone signal transduction 18599455

Basic gene information ( show / hide contents )

Locus AT5G62000 | Chromosome: 5 | Strand: +
Description transcription factor
Alias
ARF1-BP( alias )
ARF2( alias )
HSS( alias )
Gene model
AT5G62000.1 | From: 24927584 | To: 24932440
AT5G62000.2 | From: 24927608 | To: 24932438
AT5G62000.3 | From: 24927608 | To: 24932440
Sequence
AT5G62000.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G62000.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G62000.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 9188533
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
chloroplast PMID:
biological_process
negative regulation of transcription, DNA-dependent PMID: 15960614
ovule development PMID: 16339187
fruit dehiscence PMID: 16176952
leaf senescence PMID: 16176952
negative regulation of cell proliferation PMID: 16339187
positive regulation of flower development PMID: 16176952
floral organ abscission PMID: 16176952
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  auxin     brassinosteroid  

[   auxin   ]

Genotype PMID Type
arf1-5 arf2-8 16339187 mutant
arf2-8 16339187 mutant

[   brassinosteroid   ]

Genotype PMID Type
arf2-8 16339187 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G62000.1 
length: 3522 
miRNA : ath-miR868
length: 21 
 
mfe: -22.9 kcal/mol 
p-value: 0.059249 
 
position  3055 
target 5' U       C            C 
           CAUUGUC AGCGCU GGGAA  
           GUAAUAG UCGUGA UUCUU  
miRNA  3' C              A     C 
 
 
target: AT5G62000.2 
length: 3391 
miRNA : ath-miR868
length: 21 
 
mfe: -22.9 kcal/mol 
p-value: 0.056804 
 
position  2929 
target 5' U       C            C 
           CAUUGUC AGCGCU GGGAA  
           GUAAUAG UCGUGA UUCUU  
miRNA  3' C              A     C 
 
 
target: AT5G62000.3 
length: 3396 
miRNA : ath-miR868
length: 21 
 
mfe: -22.9 kcal/mol 
p-value: 0.056898 
 
position  2929 
target 5' U       C            C 
           CAUUGUC AGCGCU GGGAA  
           GUAAUAG UCGUGA UUCUU  
miRNA  3' C              A     C 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G62000AT1G01480negativeotherN/Amutance16339187
AT5G62000AT1G62960negativeotherN/Amutance16339187
AT5G62000AT1G74740PositivetransciptN/Amolecular18599455
AT5G62000AT2G14610negativetransciptN/Abiochem17276977
AT5G62000AT2G22810negativeotherN/Amutance16339187
AT5G62000AT3G49700negativeotherN/Amutance16339187
AT5G62000AT4G08040negativeotherN/Amutance16339187
AT5G62000AT4G11280negativeotherN/Amutance16339187
AT5G62000AT4G26200negativeotherN/Amutance16339187
AT5G62000AT4G30610PositivetransciptN/AGO/othersN/A
AT5G62000AT4G37770negativeotherN/Amutance16339187
AT5G62000AT5G18560PositivetransciptN/Amutance17630277
AT5G62000AT5G51690negativeotherN/Amutance16339187
AT5G62000AT5G65800negativeotherN/Amutance16339187
AT5G62000CBF/DREBnegativetransciptN/Abiochem17276977

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_16783
AccessionTaxon
NP_001031208Arabidopsis thaliana
NP_176184Arabidopsis thaliana
NP_849830Arabidopsis thaliana
NP_001047137Oryza sativa Japonica Group
NP_001052879Oryza sativa Japonica Group
e_gw1.64.107.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_140304Physcomitrella patens subsp. patens
estExt_Genewise1.C_2800001Physcomitrella patens subsp. patens
gw1.341.65.1Physcomitrella patens subsp. patens
29609.m000586Ricinus communis
29609.m000587Ricinus communis
29742.m001397Ricinus communis
30068.m002516Ricinus communis
NP_001031548Arabidopsis thaliana
NP_001031706Arabidopsis thaliana
NP_182176Arabidopsis thaliana
NP_194129Arabidopsis thaliana
NP_567119Arabidopsis thaliana
NP_973701Arabidopsis thaliana
NP_201006Arabidopsis thaliana
NP_851244Arabidopsis thaliana
NP_974980 ( AT5G62000 )Arabidopsis thaliana
NP_001045270Oryza sativa Japonica Group
NP_001066765Oryza sativa Japonica Group
NP_001067988Oryza sativa Japonica Group
30128.m008545Ricinus communis
30147.m014418Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023628.30000000000004E-19164265IPR003340Transcriptional factor B3
PROSITEPS508630.0164266IPR003340Transcriptional factor B3
PfamPF065071.8000000000000163E-34290372IPR010525Auxin response factor
PfamPF023091.3000000000000006E-27641823IPR003311AUX/IAA protein
PROSITEPS509620.0734816IPR011525Aux/IAA-ARF-dimerisation