You are querying gene by "AT5G60410".

Locus: AT5G60410 Alias: ATSIZ1

Hormone Evidence Function category Gene Description PMID
salicylic acidMutant Hormone signal transduction Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling 19959255
abscisic acidMutant Hormone signal transduction Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling 20404572

Basic gene information ( show / hide contents )

Locus AT5G60410 | Chromosome: 5 | Strand: +
Description Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling
Alias
ATSIZ1( alias )
SIZ1( alias )
Gene model
AT5G60410.2 | From: 24312116 | To: 24318341
AT5G60410.1 | From: 24312116 | To: 24318373
AT5G60410.3 | From: 24312116 | To: 24317802
AT5G60410.4 | From: 24312116 | To: 24318317
Sequence
AT5G60410.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G60410.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G60410.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G60410.4 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
SUMO ligase activity PMID: 15894620
cellular_component
nucleus PMID: 15894620
biological_process
response to water deprivation PMID: 17905899
growth PMID: 17905899
response to freezing PMID: 17416732
defense response signaling pathway, resistance gene-dependent PMID: 17163880
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  salicylic acid     abscisic acid  

[   salicylic acid   ]

Genotype PMID Type
siz1-2 19837819 mutant

[   abscisic acid   ]

Genotype PMID Type
siz1-2 19837819 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G60410.1 
length: 3336 
miRNA : ath-miR780.1
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.036608 
 
position  638 
target 5' U   A           A      C 
           GCC UGUUUGGCAGC UGUUGG  
           UGG ACGAGUUGUCG ACGAUC  
miRNA  3'                        U 
 
 
target: AT5G60410.2 
length: 3219 
miRNA : ath-miR780.1
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.035154 
 
position  638 
target 5' U   A           A      C 
           GCC UGUUUGGCAGC UGUUGG  
           UGG ACGAGUUGUCG ACGAUC  
miRNA  3'                        U 
 
 
target: AT5G60410.3 
length: 3013 
miRNA : ath-miR780.1
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.032585 
 
position  638 
target 5' U   A           A      C 
           GCC UGUUUGGCAGC UGUUGG  
           UGG ACGAGUUGUCG ACGAUC  
miRNA  3'                        U 
 
 
target: AT5G60410.4 
length: 3154 
miRNA : ath-miR780.1
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.034344 
 
position  638 
target 5' U   A           A      C 
           GCC UGUUUGGCAGC UGUUGG  
           UGG ACGAGUUGUCG ACGAUC  
miRNA  3'                        U 
 
 
target: AT5G60410.5 
length: 3158 
miRNA : ath-miR780.1
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.034394 
 
position  638 
target 5' U   A           A      C 
           GCC UGUUUGGCAGC UGUUGG  
           UGG ACGAGUUGUCG ACGAUC  
miRNA  3'                        U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_16276
AccessionTaxon
estExt_fgenesh1_pg.C_160242Physcomitrella patens subsp. patens
NP_001032108Arabidopsis thaliana
NP_001032109Arabidopsis thaliana
NP_001119465Arabidopsis thaliana
NP_200849 ( AT5G60410 )Arabidopsis thaliana
NP_974969Arabidopsis thaliana
30111.m000729Ricinus communis
estExt_fgenesh1_pg.C_940024Physcomitrella patens subsp. patens
NP_001051092Oryza sativa Japonica Group
NP_001054517Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_100194Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_620038Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF020374.800000000000008E-61143IPR003034DNA-binding SAP
SMARTSM005132.1000003726265565E-61145IPR003034DNA-binding SAP
PROSITEPS508000.01145IPR003034DNA-binding SAP
PfamPF020376.2e-091143IPR003034DNA-binding SAP
SMARTSM005132.8e-061145IPR003034DNA-binding SAP
PROSITEPS5080012.3231145IPR003034DNA-binding SAP
PfamPF020375.8e-091143IPR003034DNA-binding SAP
SMARTSM005132.8e-061145IPR003034DNA-binding SAP
PROSITEPS5080012.3231145IPR003034DNA-binding SAP
PfamPF020374.900000000000004E-61143IPR003034DNA-binding SAP
SMARTSM005132.1000003726265565E-61145IPR003034DNA-binding SAP
PROSITEPS508000.01145IPR003034DNA-binding SAP
SuperFamilySSF579033.4E-8106173IPR011011Zinc finger, FYVE/PHD-type
SuperFamilySSF579033.4e-08106173IPR011011Zinc finger, FYVE/PHD-type
SuperFamilySSF579033.4e-08106173IPR011011Zinc finger, FYVE/PHD-type
SuperFamilySSF579033.4E-8106173IPR011011Zinc finger, FYVE/PHD-type
PfamPF006285.700000000000001E-5114166IPR019787Zinc finger, PHD-finger
SMARTSM002498.299995811800066E-11114166IPR001965Zinc finger, PHD-type
PfamPF006287.3e-08114166IPR019787Zinc finger, PHD-finger
SMARTSM002491.5e-10114166IPR001965Zinc finger, PHD-type
PfamPF006286.8e-08114166IPR019787Zinc finger, PHD-finger
SMARTSM002491.5e-10114166IPR001965Zinc finger, PHD-type
PfamPF006285.799999999999996E-5114166IPR019787Zinc finger, PHD-finger
SMARTSM002498.299995811800066E-11114166IPR001965Zinc finger, PHD-type
PROSITEPS013590.0115165IPR019786Zinc finger, PHD-type, conserved site
PROSITEPS01359NA115165IPR019786Zinc finger, PHD-type, conserved site
PROSITEPS01359NA115165IPR019786Zinc finger, PHD-type, conserved site
PROSITEPS013590.0115165IPR019786Zinc finger, PHD-type, conserved site
PROSITEPS510440.0348425IPR004181Zinc finger, MIZ-type
PROSITEPS5104435.370348425IPR004181Zinc finger, MIZ-type
PROSITEPS5104435.370348425IPR004181Zinc finger, MIZ-type
PROSITEPS510440.0348425IPR004181Zinc finger, MIZ-type
PfamPF028914.8000000000000086E-15359407IPR004181Zinc finger, MIZ-type
PfamPF028916.2e-18359407IPR004181Zinc finger, MIZ-type
PfamPF028915.7e-18359407IPR004181Zinc finger, MIZ-type
PfamPF028914.900000000000004E-15359407IPR004181Zinc finger, MIZ-type