You are querying gene by "AT5G59780".

Locus: AT5G59780 Alias: AtMYB59

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - response to ethylene stimulus 16463103
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
auxinGeneOntology - response to auxin stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103
gibberellinGeneOntology - response to gibberellin stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT5G59780 | Chromosome: 5 | Strand: -
Description response to auxin stimulus
Alias
AtMYB59( alias )
MYB59( alias )
Gene model
AT5G59780.1 | From: 24099423 | To: 24100657
AT5G59780.3 | From: 24099423 | To: 24100612
AT5G59780.2 | From: 24099423 | To: 24100643
Sequence
AT5G59780.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G59780.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G59780.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
biological_process
response to auxin stimulus PMID: 16463103
regulation of transcription, DNA-dependent PMID:
response to jasmonic acid stimulus PMID: 16463103
response to gibberellin stimulus PMID: 16463103
response to ethylene stimulus PMID: 16463103
response to salicylic acid stimulus PMID: 16463103
response to cadmium ion PMID: 16463103
response to salt stress PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G59780.1 
length: 1128 
miRNA : ath-miR159a
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.032260 
 
position  884 
target 5' G   U G  G             A 
           UAG G UC CCUUUAGUCUAGG  
           AUC C AG GGAAGUUAGGUUU  
miRNA  3'     U G                  
 
 
target: AT5G59780.2 
length: 1035 
miRNA : ath-miR159a
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.029219 
 
position  791 
target 5' G   U G  G             A 
           UAG G UC CCUUUAGUCUAGG  
           AUC C AG GGAAGUUAGGUUU  
miRNA  3'     U G                  
 
 
target: AT5G59780.3 
length: 1010 
miRNA : ath-miR159a
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.028398 
 
position  766 
target 5' G   U G  G             A 
           UAG G UC CCUUUAGUCUAGG  
           AUC C AG GGAAGUUAGGUUU  
miRNA  3'     U G                  
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_33908
AccessionTaxon
NP_001030816Arabidopsis thaliana
NP_001078249Arabidopsis thaliana
NP_190199Arabidopsis thaliana
NP_851225 ( AT5G59780 )Arabidopsis thaliana
NP_851226Arabidopsis thaliana
NP_200786Arabidopsis thaliana
NP_001067061Oryza sativa Japonica Group
NP_001068517Oryza sativa Japonica Group
29788.m000340Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.10.602.70000183580768E-14147IPR012287Homeodomain-related
PANTHERPTHR106411.2000011745813985E-441168IPR015495Myb transcription factor
SMARTSM007171.8000014928719636E-12145IPR001005SANT, DNA-binding
PROSITEPS512940.0147IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PROSITEPS500900.0136IPR017877MYB-like
PfamPF002491.3000000000000007E-11243IPR014778Myb, DNA-binding
SuperFamilySSF466893.3E-12247IPR009057Homeodomain-like
PROSITEPS5129416.980557IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PANTHERPTHR106411e-876233IPR015495Myb transcription factor
Gene3DG3DSA:1.10.10.606.5e-14860IPR012287Homeodomain-related
SMARTSM007171.8e-15959IPR001005SANT, DNA-binding
PfamPF002491.9e-151057IPR014778Myb, DNA-binding
SuperFamilySSF466893.9e-201080IPR009057Homeodomain-like
PANTHERPTHR106413.600020150309944E-6818212IPR015495Myb transcription factor
PROSITEPS512940.03791IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SuperFamilySSF466896.8E-163891IPR009057Homeodomain-like
SMARTSM007171.2000011745813376E-174189IPR001005SANT, DNA-binding
PfamPF002491.2000000000000005E-124287IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.601.4999997758334064E-164391IPR012287Homeodomain-related
PROSITEPS5129427.81458112IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SMARTSM007172.2e-1762110IPR001005SANT, DNA-binding
PfamPF002491.8e-1563108IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.601.4e-1664112IPR012287Homeodomain-related
SuperFamilySSF466891.5e-0969121IPR009057Homeodomain-like