You are querying gene by "AT5G59430".

Locus: AT5G59430 Alias: ATTRP1

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - response to ethylene stimulus 16463103
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
auxinGeneOntology - response to auxin stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103
gibberellinGeneOntology - response to gibberellin stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT5G59430 | Chromosome: 5 | Strand: +
Description response to gibberellin stimulus
Alias
ATTRP1( alias )
Gene model
AT5G59430.1 | From: 23984837 | To: 23988171
AT5G59430.2 | From: 23984541 | To: 23988171
AT5G59430.3 | From: 23984541 | To: 23988171
AT5G59430.4 | From: 23984539 | To: 23988171
Sequence
AT5G59430.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G59430.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G59430.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G59430.4 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
cellular_component
nucleus PMID:
biological_process
response to salicylic acid stimulus PMID: 16463103
response to cadmium ion PMID: 16463103
response to auxin stimulus PMID: 16463103
response to salt stress PMID: 16463103
response to gibberellin stimulus PMID: 16463103
response to jasmonic acid stimulus PMID: 16463103
response to ethylene stimulus PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G59430.1 
length: 2162 
miRNA : ath-miR399b
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.020934 
 
position  1933 
target 5' G   U  U          U   U 
           AGG CG CUCUCCUUUG GUA  
           UCC GU GAGAGGAAAC CGU  
miRNA  3' G   C  U                
 
 
target: AT5G59430.1 
length: 2162 
miRNA : ath-miR399c
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.018455 
 
position  1933 
target 5' G   U  U          U   U 
           AGG CG CUCUCCUUUG GUA  
           UCC GU GAGAGGAAAC CGU  
miRNA  3' G   C  U                
 
 
target: AT5G59430.1 
length: 2162 
miRNA : ath-miR426
length: 21 
 
mfe: -21.5 kcal/mol 
p-value: 0.060754 
 
position  403 
target 5' U  A     G     C      G 
           GU AAGGA GAAUU CCGGAG  
           CA UUCCU UUUAA GGUUUU  
miRNA  3' G        G     A        
 
 
target: AT5G59430.1 
length: 2162 
miRNA : ath-miR775
length: 20 
 
mfe: -26.1 kcal/mol 
p-value: 0.029138 
 
position  836 
target 5' U                    A 
           UGGC UU CUAGACAUUGGA  
           ACCG GA GAUCUGUAGCUU  
miRNA  3'      U  C              
 
 
target: AT5G59430.1 
length: 2162 
miRNA : ath-miR869.1
length: 21 
 
mfe: -23.5 kcal/mol 
p-value: 0.042957 
 
position  1172 
target 5' G              U     G 
           GACACC GAGUUGG CUGAU  
           UUGUGG CUUAACU GGUUA  
miRNA  3' G      U       U       
 
 
target: AT5G59430.2 
length: 2356 
miRNA : ath-miR399b
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.022770 
 
position  2127 
target 5' G   U  U          U   U 
           AGG CG CUCUCCUUUG GUA  
           UCC GU GAGAGGAAAC CGU  
miRNA  3' G   C  U                
 
 
target: AT5G59430.2 
length: 2356 
miRNA : ath-miR399c
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.020165 
 
position  2127 
target 5' G   U  U          U   U 
           AGG CG CUCUCCUUUG GUA  
           UCC GU GAGAGGAAAC CGU  
miRNA  3' G   C  U                
 
 
target: AT5G59430.2 
length: 2356 
miRNA : ath-miR426
length: 21 
 
mfe: -21.5 kcal/mol 
p-value: 0.066921 
 
position  597 
target 5' U  A     G     C      G 
           GU AAGGA GAAUU CCGGAG  
           CA UUCCU UUUAA GGUUUU  
miRNA  3' G        G     A        
 
 
target: AT5G59430.2 
length: 2356 
miRNA : ath-miR775
length: 20 
 
mfe: -26.1 kcal/mol 
p-value: 0.032400 
 
position  1030 
target 5' U                    A 
           UGGC UU CUAGACAUUGGA  
           ACCG GA GAUCUGUAGCUU  
miRNA  3'      U  C              
 
 
target: AT5G59430.2 
length: 2356 
miRNA : ath-miR869.1
length: 21 
 
mfe: -23.5 kcal/mol 
p-value: 0.046536 
 
position  1366 
target 5' G              U     G 
           GACACC GAGUUGG CUGAU  
           UUGUGG CUUAACU GGUUA  
miRNA  3' G      U       U       
 
 
target: AT5G59430.3 
length: 2268 
miRNA : ath-miR399b
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.021942 
 
position  2039 
target 5' G   U  U          U   U 
           AGG CG CUCUCCUUUG GUA  
           UCC GU GAGAGGAAAC CGU  
miRNA  3' G   C  U                
 
 
target: AT5G59430.3 
length: 2268 
miRNA : ath-miR399c
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.019392 
 
position  2039 
target 5' G   U  U          U   U 
           AGG CG CUCUCCUUUG GUA  
           UCC GU GAGAGGAAAC CGU  
miRNA  3' G   C  U                
 
 
target: AT5G59430.3 
length: 2268 
miRNA : ath-miR426
length: 21 
 
mfe: -21.5 kcal/mol 
p-value: 0.064130 
 
position  597 
target 5' U  A     G     C      G 
           GU AAGGA GAAUU CCGGAG  
           CA UUCCU UUUAA GGUUUU  
miRNA  3' G        G     A        
 
 
target: AT5G59430.3 
length: 2268 
miRNA : ath-miR775
length: 20 
 
mfe: -26.1 kcal/mol 
p-value: 0.030920 
 
position  1030 
target 5' U                    A 
           UGGC UU CUAGACAUUGGA  
           ACCG GA GAUCUGUAGCUU  
miRNA  3'      U  C              
 
 
target: AT5G59430.3 
length: 2268 
miRNA : ath-miR869.1
length: 21 
 
mfe: -23.5 kcal/mol 
p-value: 0.044923 
 
position  1366 
target 5' G              U     G 
           GACACC GAGUUGG CUGAU  
           UUGUGG CUUAACU GGUUA  
miRNA  3' G      U       U       
 
 
target: AT5G59430.4 
length: 2355 
miRNA : ath-miR399b
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.022761 
 
position  2126 
target 5' G   U  U          U   U 
           AGG CG CUCUCCUUUG GUA  
           UCC GU GAGAGGAAAC CGU  
miRNA  3' G   C  U                
 
 
target: AT5G59430.4 
length: 2355 
miRNA : ath-miR399c
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.020156 
 
position  2126 
target 5' G   U  U          U   U 
           AGG CG CUCUCCUUUG GUA  
           UCC GU GAGAGGAAAC CGU  
miRNA  3' G   C  U                
 
 
target: AT5G59430.4 
length: 2355 
miRNA : ath-miR426
length: 21 
 
mfe: -21.5 kcal/mol 
p-value: 0.066889 
 
position  596 
target 5' U  A     G     C      G 
           GU AAGGA GAAUU CCGGAG  
           CA UUCCU UUUAA GGUUUU  
miRNA  3' G        G     A        
 
 
target: AT5G59430.4 
length: 2355 
miRNA : ath-miR775
length: 20 
 
mfe: -26.1 kcal/mol 
p-value: 0.032384 
 
position  1029 
target 5' U                    A 
           UGGC UU CUAGACAUUGGA  
           ACCG GA GAUCUGUAGCUU  
miRNA  3'      U  C              
 
 
target: AT5G59430.4 
length: 2355 
miRNA : ath-miR869.1
length: 21 
 
mfe: -23.5 kcal/mol 
p-value: 0.046518 
 
position  1365 
target 5' G              U     G 
           GACACC GAGUUGG CUGAU  
           UUGUGG CUUAACU GGUUA  
miRNA  3' G      U       U       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_33909
AccessionTaxon
NP_001030821Arabidopsis thaliana
NP_001030822Arabidopsis thaliana
NP_001078770Arabidopsis thaliana
NP_001078771Arabidopsis thaliana
NP_190243Arabidopsis thaliana
NP_200751Arabidopsis thaliana
NP_851221 ( AT5G59430 )Arabidopsis thaliana
e_gw1.132.51.1Physcomitrella patens subsp. patens
gw1.98.100.1Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS500530.0292361IPR019955Ubiquitin supergroup
PROSITEPS5005310.049293362IPR019955Ubiquitin supergroup
PROSITEPS500530.0293362IPR019955Ubiquitin supergroup
Gene3DG3DSA:1.10.10.601.3999989204987674E-9458528IPR012287Homeodomain-related
Gene3DG3DSA:1.10.10.601.3e-09459529IPR012287Homeodomain-related
Gene3DG3DSA:1.10.10.601.3999989204987674E-9459529IPR012287Homeodomain-related
SuperFamilySSF466891.100000298961487E-6461519IPR009057Homeodomain-like
PROSITEPS512940.0462521IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SuperFamilySSF466891.1e-06462520IPR009057Homeodomain-like
SuperFamilySSF466891.100000298961487E-6462520IPR009057Homeodomain-like
PROSITEPS5129415.485463522IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PROSITEPS512940.0463522IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SMARTSM007171.6999992228404958E-7466519IPR001005SANT, DNA-binding
SMARTSM007172.9e-07467520IPR001005SANT, DNA-binding
SMARTSM007171.6999992228404958E-7467520IPR001005SANT, DNA-binding