You are querying gene by "AT5G58550".

Locus: AT5G58550 Alias: EOL2

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - regulation of ethylene biosynthetic process 15118728

Basic gene information ( show / hide contents )

Locus AT5G58550 | Chromosome: 5 | Strand: -
Description regulation of ethylene biosynthetic process
Alias
EOL2( alias )
Gene model
AT5G58550.1 | From: 23682521 | To: 23685700
Sequence
AT5G58550.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID:
binding PMID:
biological_process
regulation of ethylene biosynthetic process PMID: 15118728
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G58550.1 
length: 2934 
miRNA : ath-miR172b*
length: 20 
 
mfe: -23.0 kcal/mol 
p-value: 0.029578 
 
position  448 
target 5' A      G          U  U 
           UGGAUU UAAUGG GCU GC  
           ACUUAG AUUACC CGA CG  
miRNA  3' C      A      A        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_27590
AccessionTaxon
NP_001030839Arabidopsis thaliana
NP_190745Arabidopsis thaliana
NP_192177Arabidopsis thaliana
NP_200663 ( AT5G58550 )Arabidopsis thaliana
NP_001049819Oryza sativa Japonica Group
NP_001059027Oryza sativa Japonica Group
NP_001068166Oryza sativa Japonica Group
e_gw1.11.41.1Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_87000031Physcomitrella patens subsp. patens
29883.m001951Ricinus communis
30079.m000451Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF546958.3e-11182306IPR011333BTB/POZ fold
Gene3DG3DSA:3.30.710.101.4e-07204303IPR011333BTB/POZ fold
PfamPF006512.7e-05204303IPR013069BTB/POZ
SMARTSM002250.00024207307IPR000210BTB/POZ-like
Gene3DG3DSA:1.25.40.107.5e-08405573IPR011990Tetratricopeptide-like helical
SMARTSM0002872409442IPR019734Tetratricopeptide repeat
SMARTSM000280.49538571IPR019734Tetratricopeptide repeat
PROSITEPS500056.785538571IPR019734Tetratricopeptide repeat
PROSITEPS502936.633538571IPR013026Tetratricopeptide repeat-containing
SMARTSM000283.2e+02664697IPR019734Tetratricopeptide repeat
Gene3DG3DSA:1.25.40.108.2e-15697865IPR011990Tetratricopeptide-like helical
SMARTSM000280.0002738771IPR019734Tetratricopeptide repeat
PROSITEPS500059.352738771IPR019734Tetratricopeptide repeat
PROSITEPS5029310.339738771IPR013026Tetratricopeptide repeat-containing
PfamPF005155.2e-07739769IPR001440Tetratricopeptide TPR-1
PROSITEPS502937.879815867IPR013026Tetratricopeptide repeat-containing
PROSITEPS500056.549834867IPR019734Tetratricopeptide repeat
SMARTSM0002810867900IPR019734Tetratricopeptide repeat
PROSITEPS502936.566867900IPR013026Tetratricopeptide repeat-containing