You are querying gene by "AT5G58230".

Locus: AT5G58230 Alias: MEE70

Hormone Evidence Function category Gene Description PMID
abscisic acidTransgenic Hormone signal transduction Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1. 19825648

Basic gene information ( show / hide contents )

Locus AT5G58230 | Chromosome: 5 | Strand: +
Description Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.
Alias
MEE70( alias )
MSI1( alias )
Gene model
AT5G58230.1 | From: 23573238 | To: 23575471
Sequence
AT5G58230.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 12970192
cellular_component
chromatin remodeling complex PMID: 12970192
nucleus PMID: 12736201
biological_process
pollen development PMID: 18045841
regulation of flower development PMID: 16554362
seed development PMID: 17172356
seed coat development PMID: 17172356
trichome differentiation PMID: 17021044
cell proliferation PMID: 17021044
multicellular organismal development PMID: 12736201
heterochromatin formation PMID: 16452472
chromatin modification PMID: 12736201
positive regulation of cell cycle PMID: 18045841
embryonic development ending in seed dormancy PMID: 15634699
leaf development PMID: 17021044
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
msi1-cs 19825648 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

No miRNA interaction information for this gene.

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10690
AccessionTaxon
NP_200631 ( AT5G58230 )Arabidopsis thaliana
131412Chlamydomonas reinhardtii
NP_001050741Oryza sativa Japonica Group
e_gw1.12.00.156.1Ostreococcus tauri
estExt_fgenesh1_pg.C_120177Physcomitrella patens subsp. patens
29709.m001222Ricinus communis
NP_001063810Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF509781.3E-553404IPR011046WD40 repeat-like-containing domain
PfamPF122652.1000000000000034E-271889IPR022052Histone-binding protein RBBP4
Gene3DG3DSA:2.130.10.101.2000011745813984E-51115402IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003205.0000001782354415115154IPR001680WD40 repeat
SMARTSM003204.7000006865111673E-4167207IPR001680WD40 repeat
PfamPF004000.01171207IPR019781WD40 repeat, subgroup
PROSITEPS500820.0174216IPR019782WD40 repeat 2
PROSITEPS502940.0174412IPR017986WD40-repeat-containing domain
PRINTSPR003209.499999851064385E-6194208IPR020472G-protein beta WD-40 repeat, region
PROSITEPS006780.0194208IPR019775WD40 repeat, conserved site
SMARTSM003200.004800000403461752216256IPR001680WD40 repeat
PfamPF004002.4220256IPR019781WD40 repeat, subgroup
PROSITEPS500820.0223265IPR019782WD40 repeat 2
SMARTSM003203.300001644806241E-8262302IPR001680WD40 repeat
PfamPF004002.3999999999999997E-5264302IPR019781WD40 repeat, subgroup
PROSITEPS500820.0269311IPR019782WD40 repeat 2
PRINTSPR003209.499999851064385E-6289303IPR020472G-protein beta WD-40 repeat, region
SMARTSM003208.000000242428033E-5306346IPR001680WD40 repeat
PfamPF004003.0308346IPR019781WD40 repeat, subgroup
PROSITEPS500820.0313355IPR019782WD40 repeat 2
SMARTSM003200.008399998585923064363403IPR001680WD40 repeat
PfamPF004000.86366402IPR019781WD40 repeat, subgroup
PROSITEPS500820.0370404IPR019782WD40 repeat 2
PRINTSPR003209.499999851064385E-6390404IPR020472G-protein beta WD-40 repeat, region