You are querying gene by "AT5G57740".

Locus: AT5G57740 Alias: XBAT32

Hormone Evidence Function category Gene Description PMID
ethyleneMutant Hormone biosynthesis ubiquitin ligase 20511490
abscisic acidMutant Hormone biosynthesis ubiquitin ligase 20511490
auxinMutant Hormone signal transduction ubiquitin ligase 20511490

Basic gene information ( show / hide contents )

Locus AT5G57740 | Chromosome: 5 | Strand: -
Description ubiquitin ligase
Alias
XBAT32( alias )
Gene model
AT5G57740.1 | From: 23411811 | To: 23414876
Sequence
AT5G57740.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID:
zinc ion binding PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  ethylene     abscisic acid     auxin  

[   ethylene   ]

Genotype PMID Type
xbat32 20511490 mutant

[   abscisic acid   ]

Genotype PMID Type
xbat32 20511490 mutant

[   auxin   ]

Genotype PMID Type
xbat32 20511490 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G57740.1 
length: 2236 
miRNA : ath-miR827
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.006629 
 
position  441 
target 5' U   G          G     U 
           GUU UGUUGAUGGU AUUUG  
           CAA ACAACUACCA UAGAU  
miRNA  3' U              G     U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10032
AccessionTaxon
NP_196927Arabidopsis thaliana
8129Chlamydomonas reinhardtii
30072.m000965Ricinus communis
e_gw1.256.8.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_550097Physcomitrella patens subsp. patens
gw1.13.75.1Physcomitrella patens subsp. patens
NP_001054396Oryza sativa Japonica Group
NP_001062603Oryza sativa Japonica Group
NP_001062606Oryza sativa Japonica Group
NP_001067201Oryza sativa Japonica Group
NP_001067203Oryza sativa Japonica Group
NP_001030635Arabidopsis thaliana
NP_187122Arabidopsis thaliana
29598.m000449Ricinus communis
NP_200582 ( AT5G57740 )Arabidopsis thaliana
estExt_fgenesh1_pg.C_740084Physcomitrella patens subsp. patens
150205Chlamydomonas reinhardtii
estExt_fgenesh1_pg.C_Chr_04.00010248Ostreococcus tauri
NP_001065515Oryza sativa Japonica Group
NP_196344Arabidopsis thaliana
30147.m014285Ricinus communis
29929.m004693Ricinus communis
30190.m010963Ricinus communis
NP_001048357Oryza sativa Japonica Group
95267Chlamydomonas reinhardtii
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.25.40.205.099987625241076E-5619314IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.6E-5719280IPR020683Ankyrin repeat-containing domain
PROSITEPS502970.020261IPR020683Ankyrin repeat-containing domain
SMARTSM002484.8999995178235944E-55079IPR002110Ankyrin repeat
PROSITEPS500880.05082IPR002110Ankyrin repeat
PfamPF000232.7000000000000006E-45281IPR002110Ankyrin repeat
SMARTSM002480.001199999857031013283112IPR002110Ankyrin repeat
PROSITEPS500880.083115IPR002110Ankyrin repeat
PfamPF000230.002600000000000000384112IPR002110Ankyrin repeat
PfamPF000230.018117139IPR002110Ankyrin repeat
SMARTSM002480.0030000006799287132117148IPR002110Ankyrin repeat
PROSITEPS500880.0117139IPR002110Ankyrin repeat
SMARTSM002487.299997894055631E-7177206IPR002110Ankyrin repeat
PROSITEPS500880.0177209IPR002110Ankyrin repeat
PfamPF000239.900000000000003E-7178208IPR002110Ankyrin repeat
SMARTSM002480.0035000004329156487220249IPR002110Ankyrin repeat
PROSITEPS500880.0220252IPR002110Ankyrin repeat
PfamPF000231.2000000000000005E-5221251IPR002110Ankyrin repeat
SMARTSM001846.699996876259988E-5321371IPR001841Zinc finger, RING-type
PROSITEPS500890.0321372IPR001841Zinc finger, RING-type
PROSITEPS005180.0336345IPR017907Zinc finger, RING-type, conserved site