You are querying gene by "AT5G57390".

Locus: AT5G57390 Alias: AIL5

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.essential for the developmental transition between the embryonic and vegetative phases in plants.Overexpression results in the formation of somatic embryos on cotyledons. 19109301

Basic gene information ( show / hide contents )

Locus AT5G57390 | Chromosome: 5 | Strand: -
Description Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.essential for the developmental transition between the embryonic and vegetative phases in plants.Overexpression results in the formation of somatic embryos on cotyledons.
Alias
AIL5( alias )
Gene model
AT5G57390.1 | From: 23270685 | To: 23273676
Sequence
AT5G57390.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 10948255
cellular_component
nucleus PMID: 10948255
biological_process
organ morphogenesis PMID: 9636071
regulation of transcription, DNA-dependent PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
cho1-1 19109301 mutant
cho1-2 19109301 mutant
cho1-3 19109301 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G57390.1 
length: 1690 
miRNA : ath-miR391
length: 21 
 
mfe: -28.7 kcal/mol 
p-value: 0.017115 
 
position  391 
target 5' C        C       C   C 
           GGCGUUGU UUCUCUU CGA  
           CCGCGAUA GAGAGGA GCU  
miRNA  3' A                C   U 
 
 
target: AT5G57390.1 
length: 1690 
miRNA : ath-miR869.2
length: 21 
 
mfe: -24.9 kcal/mol 
p-value: 0.036954 
 
position  1087 
target 5' A    C A             U 
           GUCA C AUUUCGACAUCAG  
           CAGU G UAGAGUUGUGGUC  
miRNA  3'      U A             U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_19559
AccessionTaxon
NP_175530Arabidopsis thaliana
NP_188720Arabidopsis thaliana
NP_001045103Oryza sativa Japonica Group
29562.m000029Ricinus communis
NP_177401Arabidopsis thaliana
29706.m001286Ricinus communis
NP_195489Arabidopsis thaliana
NP_001049466Oryza sativa Japonica Group
e_gw1.03.00.529.1Ostreococcus tauri
28976.m000163Ricinus communis
NP_197245Arabidopsis thaliana
29929.m004537Ricinus communis
NP_200549 ( AT5G57390 )Arabidopsis thaliana
NP_001054108Oryza sativa Japonica Group
NP_001058256Oryza sativa Japonica Group
e_gw1.131.48.1Physcomitrella patens subsp. patens
e_gw1.66.73.1Physcomitrella patens subsp. patens
e_gw1.66.94.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1310105Physcomitrella patens subsp. patens
NP_001049927Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.730.104.8E-18202272IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PfamPF008471.3000000000000007E-9202261IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
SuperFamilySSF541719.5E-20202272IPR016177DNA-binding, integrase-type
SMARTSM003801.9999963603452083E-29203275IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PROSITEPS510320.0203269IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003673.0999994589937025E-6204215IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.102.0E-19304366IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
SuperFamilySSF541711.9E-20304366IPR016177DNA-binding, integrase-type
SMARTSM003802.1999990098070714E-33305369IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PROSITEPS510320.0305363IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PfamPF008473.799999999999999E-10306355IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003673.0999994589937025E-6345365IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding