You are querying gene by "AT5G56290".

Locus: AT5G56290 Alias: PEX5

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 11063705

Basic gene information ( show / hide contents )

Locus AT5G56290 | Chromosome: 5 | Strand: +
Description response to auxin stimulus
Alias
PEX5( alias )
Gene model
AT5G56290.1 | From: 22803732 | To: 22809387
Sequence
AT5G56290.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
peroxisome matrix targeting signal-1 binding PMID:
protein binding PMID: 11978862
biological_process
response to auxin stimulus PMID: 11063705
protein targeting to peroxisome PMID: 15548601
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G56290.1 
length: 2525 
miRNA : ath-miR172b*
length: 20 
 
mfe: -23.0 kcal/mol 
p-value: 0.024882 
 
position  894 
target 5' A      A       C   A 
           UGGAUC UGGUGGU CUG  
           ACUUAG AUUACCA GAC  
miRNA  3' C      A       C   G 
 
 
target: AT5G56290.1 
length: 2525 
miRNA : ath-miR779.1
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.014981 
 
position  931 
target 5' U      A          U   U 
           UGAGCA CAACAUGGUG GAA  
           ACUCGU GUUGUAUCGU CUU  
miRNA  3' U      C                
 
 
target: AT5G56290.1 
length: 2525 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -24.0 kcal/mol 
p-value: 0.051221 
 
position  1689 
target 5' A   U   U C             C 
           UGA GCG G ACAGGAGGCUGAU  
           ACU UGC U UGUUCUUUGACUA  
miRNA  3'     U                     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12143
AccessionTaxon
NP_200440 ( AT5G56290 )Arabidopsis thaliana
195550Chlamydomonas reinhardtii
NP_001062153Oryza sativa Japonica Group
fgenesh1_pm.C_Chr_05.0001000041Ostreococcus tauri
estExt_gwp_gw1.C_1500013Physcomitrella patens subsp. patens
28966.m000533Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.25.40.103.399999724376874E-52439728IPR011990Tetratricopeptide-like helical
PROSITEPS502930.0457691IPR013026Tetratricopeptide repeat-containing
SMARTSM000282.5000000066794805491524IPR019734Tetratricopeptide repeat
PROSITEPS500050.0491524IPR019734Tetratricopeptide repeat
PfamPF005150.024000000000000004590623IPR001440Tetratricopeptide TPR-1
SMARTSM000281.2999999583543568E-4590623IPR019734Tetratricopeptide repeat
PROSITEPS500050.0590623IPR019734Tetratricopeptide repeat
SMARTSM000280.04200000019107262624657IPR019734Tetratricopeptide repeat
PROSITEPS500050.0624657IPR019734Tetratricopeptide repeat
SMARTSM000289.30000048475975E-6658691IPR019734Tetratricopeptide repeat
PROSITEPS500050.0658691IPR019734Tetratricopeptide repeat
PfamPF005153.2E-5659690IPR001440Tetratricopeptide TPR-1