You are querying gene by "AT5G56290".

Locus: AT5G56290 Alias: PEX5

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 11063705

Basic gene information ( show / hide contents )

Locus AT5G56290 | Chromosome: 5 | Strand: +
Description response to auxin stimulus
PEX5( alias )
Gene model
AT5G56290.1 | From: 22803732 | To: 22809387
AT5G56290.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
peroxisome matrix targeting signal-1 binding PMID:
protein binding PMID: 11978862
response to auxin stimulus PMID: 11063705
protein targeting to peroxisome PMID: 15548601
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT5G56290.1 
length: 2525 
miRNA : ath-miR172b*
length: 20 
mfe: -23.0 kcal/mol 
p-value: 0.024882 
position  894 
target 5' A      A       C   A 
miRNA  3' C      A       C   G 
target: AT5G56290.1 
length: 2525 
miRNA : ath-miR779.1
length: 21 
mfe: -27.7 kcal/mol 
p-value: 0.014981 
position  931 
target 5' U      A          U   U 
miRNA  3' U      C                
target: AT5G56290.1 
length: 2525 
miRNA : ath-miR837-5p
length: 21 
mfe: -24.0 kcal/mol 
p-value: 0.051221 
position  1689 
target 5' A   U   U C             C 
miRNA  3'     U                     

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12143
NP_200440 ( AT5G56290 )Arabidopsis thaliana
195550Chlamydomonas reinhardtii
NP_001062153Oryza sativa Japonica Group
fgenesh1_pm.C_Chr_05.0001000041Ostreococcus tauri
estExt_gwp_gw1.C_1500013Physcomitrella patens subsp. patens
28966.m000533Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA: helical
PROSITEPS502930.0457691IPR013026Tetratricopeptide repeat-containing
SMARTSM000282.5000000066794805491524IPR019734Tetratricopeptide repeat
PROSITEPS500050.0491524IPR019734Tetratricopeptide repeat
PfamPF005150.024000000000000004590623IPR001440Tetratricopeptide TPR-1
SMARTSM000281.2999999583543568E-4590623IPR019734Tetratricopeptide repeat
PROSITEPS500050.0590623IPR019734Tetratricopeptide repeat
SMARTSM000280.04200000019107262624657IPR019734Tetratricopeptide repeat
PROSITEPS500050.0624657IPR019734Tetratricopeptide repeat
SMARTSM000289.30000048475975E-6658691IPR019734Tetratricopeptide repeat
PROSITEPS500050.0658691IPR019734Tetratricopeptide repeat
PfamPF005153.2E-5659690IPR001440Tetratricopeptide TPR-1