You are querying gene by "AT5G56110".

Locus: AT5G56110 Alias: ATMYB103

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT5G56110 | Chromosome: 5 | Strand: +
Description Encodes a member of the R2R3 MYB transcription factor gene family that is required for anther development by regulation tapetum development, callose dissolution and exine formation. It acts upstream of MS2.
Alias
ATMYB103( alias )
ATMYB80( alias )
MS188( alias )
MYB103( alias )
Gene model
AT5G56110.1 | From: 22736417 | To: 22737890
Sequence
AT5G56110.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 17727613
biological_process
tapetal layer development PMID: 17727613
regulation of transcription, DNA-dependent PMID: 10353220
trichome morphogenesis PMID: 12848824
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G56110.1 
length: 963 
miRNA : ath-miR869.2
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.022911 
 
position  457 
target 5' C             G A G   U 
           UCGGCUGUUUCAA G C AGA  
           AGUUGAUAGAGUU U G UCU  
miRNA  3' C             G   G     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_51768
AccessionTaxon
NP_200422 ( AT5G56110 )Arabidopsis thaliana
NP_001053052Oryza sativa Japonica Group
estExt_Genewise1.C_360117Physcomitrella patens subsp. patens
gw1.257.52.1Physcomitrella patens subsp. patens
gw1.65.181.1Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR106417.900030794430429E-955146IPR015495Myb transcription factor
PROSITEPS512940.0965IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.605.09999882440013E-161264IPR012287Homeodomain-related
SMARTSM007171.8000014928719636E-141363IPR001005SANT, DNA-binding
PfamPF002494.099999999999995E-141461IPR014778Myb, DNA-binding
SuperFamilySSF466892.7E-211483IPR009057Homeodomain-like
SMARTSM007172.0999980669153363E-1266114IPR001005SANT, DNA-binding
PROSITEPS512940.066116IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.601.2000011745813984E-1668116IPR012287Homeodomain-related
PfamPF002493.100000000000002E-968110IPR014778Myb, DNA-binding
SuperFamilySSF466894.8E-1286146IPR009057Homeodomain-like