You are querying gene by "AT5G55540".

Locus: AT5G55540 Alias: LOP1

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - auxin polar transport 16531491

Basic gene information ( show / hide contents )

Locus AT5G55540 | Chromosome: 5 | Strand: -
Description auxin polar transport
Alias
LOP1( alias )
TRN1( alias )
Gene model
AT5G55540.1 | From: 22513422 | To: 22517769
Sequence
AT5G55540.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
multidimensional cell growth PMID: 8674420
auxin polar transport PMID: 16531491
leaf vascular tissue pattern formation PMID: 16531491
radial pattern formation PMID: 10887093
leaf morphogenesis PMID: 8674420
meristem organization PMID: 10887093
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G55540.1 
length: 4269 
miRNA : ath-miR2112-5p
length: 21 
 
mfe: -24.1 kcal/mol 
p-value: 0.026402 
 
position  619 
target 5' C             U U    G U 
           CAUUGAUAUCUGC G UUUG G  
           GUAACUAUAGGCG U AAAC C  
miRNA  3' U                    G   
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_59016
AccessionTaxon
NP_200365 ( AT5G55540 )Arabidopsis thaliana
estExt_fgenesh1_pg.C_3560006Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_670111Physcomitrella patens subsp. patens
27613.m000634Ricinus communis

No related Cross Link information for this gene.