You are querying gene by "AT5G55250".

Locus: AT5G55250 Alias: IAMT1

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone metabolism 16169896

Basic gene information ( show / hide contents )

Locus AT5G55250 | Chromosome: 5 | Strand: -
Description
Alias
IAMT1( alias )
Gene model
AT5G55250.1 | From: 22424699 | To: 22428170
AT5G55250.2 | From: 22424699 | To: 22427907
Sequence
AT5G55250.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G55250.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
S-adenosylmethionine-dependent methyltransferase activity PMID: 11287667
indole acetic acid carboxyl methyltransferase activity PMID: 16169896
cellular_component
cellular_component_unknown PMID:
biological_process
polarity specification of adaxial/abaxial axis PMID: 16169896
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
iamt1-D 16169896 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G55250.1 
length: 1367 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -21.9 kcal/mol 
p-value: 0.071039 
 
position  632 
target 5' G  U              C  C 
           UG GACGGAUAGGAGAU GG  
           AC UUGCUUGUUCUUUG CU  
miRNA  3'    U              A  A 
 
 
target: AT5G55250.2 
length: 1264 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -21.9 kcal/mol 
p-value: 0.066005 
 
position  529 
target 5' G  U              C  C 
           UG GACGGAUAGGAGAU GG  
           AC UUGCUUGUUCUUUG CU  
miRNA  3'    U              A  A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_37195
AccessionTaxon
NP_001078756Arabidopsis thaliana
NP_200336 ( AT5G55250 )Arabidopsis thaliana
NP_001054175Oryza sativa Japonica Group
29640.m000416Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF034925.099999999999925E-10811346IPR005299SAM dependent carboxyl methyltransferase
PfamPF034927.5E-10849384IPR005299SAM dependent carboxyl methyltransferase