You are querying gene by "AT5G55160".

Locus: AT5G55160 Alias: SUM2

Hormone Evidence Function category Gene Description PMID
salicylic acidTransgenic Hormone signal transduction Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. 20525853
Mutant Hormone signal transduction Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. 20525853

Basic gene information ( show / hide contents )

Locus AT5G55160 | Chromosome: 5 | Strand: -
Description Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays.
Alias
SUM2( alias )
SUMO 2( alias )
SUMO2( alias )
Gene model
AT5G55160.1 | From: 22400786 | To: 22402151
Sequence
AT5G55160.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 12482876
cellular_component
nucleus PMID: 17644626
cytoplasm PMID: 17644626
biological_process
protein sumoylation PMID: 12482876
response to heat PMID: 17644626
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   salicylic acid   ]

Genotype PMID Type
35S:SUM2WT 20525853 transgenic
35S:SUM2deltaGG 20525853 transgenic
sum1-1 amiR-SUM2 20525853 transgenic
35S:SUM2WT sid2-1 20525853 mutant
35S:SUM2deltaGG sid2-1 20525853 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G55160.1 
length: 652 
miRNA : ath-miR1886.2
length: 21 
 
mfe: -22.3 kcal/mol 
p-value: 0.003859 
 
position  299 
target 5' G      U U        A    A 
           UCAGUC G GGAUUUCA CUCA  
           GGUUAG U UCUAAAGU GAGU  
miRNA  3'          U        A      
 
 
target: AT5G55160.2 
length: 691 
miRNA : ath-miR1886.2
length: 21 
 
mfe: -22.3 kcal/mol 
p-value: 0.004257 
 
position  338 
target 5' G      U U        A    A 
           UCAGUC G GGAUUUCA CUCA  
           GGUUAG U UCUAAAGU GAGU  
miRNA  3'          U        A      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10582
AccessionTaxon
149066Chlamydomonas reinhardtii
174416Chlamydomonas reinhardtii
NP_001154779Arabidopsis thaliana
NP_194414Arabidopsis thaliana
NP_200327 ( AT5G55160 )Arabidopsis thaliana
NP_001045206Oryza sativa Japonica Group
NP_001045207Oryza sativa Japonica Group
e_gw1.317.29.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_610027Physcomitrella patens subsp. patens
29762.m000499Ricinus communis
30204.m001744Ricinus communis
NP_001119444Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS5005314.57815105IPR019955Ubiquitin supergroup
PROSITEPS500530.01592IPR019955Ubiquitin supergroup
SMARTSM002137.700001713877384E-141788IPR000626Ubiquitin
SMARTSM002133.5e-0830101IPR000626Ubiquitin