You are querying gene by "AT5G55120".

Locus: AT5G55120 Alias: VTC5

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16262714

Basic gene information ( show / hide contents )

Locus AT5G55120 | Chromosome: 5 | Strand: +
Description response to jasmonic acid stimulus
Alias
VTC5( alias )
Gene model
AT5G55120.1 | From: 22386321 | To: 22389093
Sequence
AT5G55120.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
galactose-1-phosphate guanylyltransferase (GDP) activity PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
L-ascorbic acid biosynthetic process PMID:
response to jasmonic acid stimulus PMID: 16262714
response to ozone PMID: 16262714
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G55120.1 
length: 1874 
miRNA : ath-miR831
length: 22 
 
mfe: -24.7 kcal/mol 
p-value: 0.028802 
 
position  1486 
target 5' A       C       G  C    G 
           AAGAAGA UAUGAAG AG GUCA  
           UUCUUCU AUGCUUC UC UAGU  
miRNA  3' G       C                 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_16120
AccessionTaxon
NP_200323 ( AT5G55120 )Arabidopsis thaliana
NP_567759Arabidopsis thaliana
113717Chlamydomonas reinhardtii
NP_001066338Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_1140127Physcomitrella patens subsp. patens
gw1.178.3.1Physcomitrella patens subsp. patens
gw1.9.83.1Physcomitrella patens subsp. patens
28582.m000323Ricinus communis
29762.m000492Ricinus communis
28609.m000197Ricinus communis
0400010547Ostreococcus tauri

No related Cross Link information for this gene.