You are querying gene by "AT5G54190".

Locus: AT5G54190 Alias: PORA

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT5G54190 | Chromosome: 5 | Strand: -
Description light-dependent NADPH:protochlorophyllide oxidoreductase A
Alias
PORA( alias )
Gene model
AT5G54190.1 | From: 22008225 | To: 22010038
AT5G54190.2 | From: 22008138 | To: 22010038
Sequence
AT5G54190.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G54190.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protochlorophyllide reductase activity PMID: 7659751
oxidoreductase activity PMID:
cellular_component
chloroplast PMID: 8624514
biological_process
chlorophyll biosynthetic process PMID: 7659751
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Porphyrin and chlorophyll metabolism protochlorophyllide reductase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G54190.1 
length: 1441 
miRNA : ath-miR843
length: 21 
 
mfe: -24.8 kcal/mol 
p-value: 0.033279 
 
position  1239 
target 5' G  C                 A 
           CU GU AGGCUUGGCCUAAA  
           GG UA UUCGAGCUGGAUUU  
miRNA  3' A  U  C                
 
 
target: AT5G54190.2 
length: 1610 
miRNA : ath-miR843
length: 21 
 
mfe: -24.8 kcal/mol 
p-value: 0.038157 
 
position  1321 
target 5' G  C                 A 
           CU GU AGGCUUGGCCUAAA  
           GG UA UUCGAGCUGGAUUU  
miRNA  3' A  U  C                
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_19085
AccessionTaxon
NP_001030948Arabidopsis thaliana
NP_171860Arabidopsis thaliana
136589Chlamydomonas reinhardtii
estExt_fgenesh2_kg.C_1460002Physcomitrella patens subsp. patens
fgenesh2_kg.scaffold_108000004Physcomitrella patens subsp. patens
29983.m003226Ricinus communis
NP_001031731Arabidopsis thaliana
NP_194474Arabidopsis thaliana
NP_200230 ( AT5G54190 )Arabidopsis thaliana
NP_001054274Oryza sativa Japonica Group
fgenesh1_pm.C_Chr_07.0001000025Ostreococcus tauri
28460.m000082Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.40.50.7204.0000030086991574E-221200IPR016040NAD(P)-binding domain
PANTHERPTHR194100.01251IPR002198Short-chain dehydrogenase/reductase SDR
TIGRFAMTIGR012890.01284IPR005979Light-dependent protochlorophyllide reductase
PfamPF001066.400000000000005E-511114IPR002198Short-chain dehydrogenase/reductase SDR
PANTHERPTHR194109.7e-18576372IPR002198Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7204.8e-4090321IPR016040NAD(P)-binding domain
TIGRFAMTIGR012897.6e-24790405IPR005979Light-dependent protochlorophyllide reductase
PRINTSPR000817.6e-0894111IPR002347Glucose/ribitol dehydrogenase
PfamPF001061.4e-1994235IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000817.6e-08169180IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000817.6e-08302319IPR002347Glucose/ribitol dehydrogenase