You are querying gene by "AT5G52310".

Locus: AT5G52310 Alias: COR78

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 16463099

Basic gene information ( show / hide contents )

Locus AT5G52310 | Chromosome: 5 | Strand: +
Description cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression; RESPONSIVE TO DESSICATION 29A;
Alias
COR78( alias )
LTI140( alias )
LTI78( alias )
RD29A( alias )
Gene model
AT5G52310.1 | From: 21258075 | To: 21260839
Sequence
AT5G52310.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
response to water deprivation PMID: 16463099
response to osmotic stress PMID: 11779861
response to cold PMID: 8448363
response to salt stress PMID: 16463099
hyperosmotic salinity response PMID: 8148648
response to abscisic acid stimulus PMID: 16463099
response to desiccation PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G52310.1 
length: 2500 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -21.4 kcal/mol 
p-value: 0.146288 
 
position  1699 
target 5' A     A   U        A  G 
           UGAGA GGA CAAGAAAC GA  
           ACUUU CUU GUUCUUUG CU  
miRNA  3'       G            A  A 
 
 
target: AT5G52310.1 
length: 2500 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -22.4 kcal/mol 
p-value: 0.098032 
 
position  999 
target 5' G U      U           G 
           G GACGAG CAGGA GCUGA  
           C UUGCUU GUUCU UGACU  
miRNA  3' A U            U     A 
 
 
target: AT5G52310.1 
length: 2500 
miRNA : ath-miR838
length: 21 
 
mfe: -24.6 kcal/mol 
p-value: 0.026803 
 
position  1965 
target 5' G       C            A 
           GUG AGG GGUGGAAGAGGA  
           CAC UUC UCAUCUUCUUUU  
miRNA  3' A   G   U              
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_45062
AccessionTaxon
NP_001032061Arabidopsis thaliana
NP_194288Arabidopsis thaliana
NP_200043Arabidopsis thaliana
NP_200044 ( AT5G52310 )Arabidopsis thaliana
NP_001065009Oryza sativa Japonica Group
30147.m013744Ricinus communis

No related Cross Link information for this gene.