You are querying gene by "AT5G52300".

Locus: AT5G52300 Alias: LTI65

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 16463099

Basic gene information ( show / hide contents )

Locus AT5G52300 | Chromosome: 5 | Strand: +
Description response to abscisic acid stimulus
Alias
LTI65( alias )
RD29B( alias )
Gene model
AT5G52300.1 | From: 21254282 | To: 21256755
AT5G52300.2 | From: 21254282 | To: 21256755
Sequence
AT5G52300.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G52300.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
abscisic acid mediated signaling PMID: 11005831
response to water deprivation PMID: 8448363
response to cold PMID: 8448363
response to salt stress PMID: 16463099
response to abscisic acid stimulus PMID: 16463099
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G52300.1 
length: 2134 
miRNA : ath-miR414
length: 21 
 
mfe: -31.3 kcal/mol 
p-value: 0.000602 
 
position  338 
target 5' A               U    C 
           GAUGAUGAUGAUGAG AUGA  
           CUGCUACUACUACUU UACU  
miRNA  3' A               C      
 
 
target: AT5G52300.1 
length: 2134 
miRNA : ath-miR830*
length: 22 
 
mfe: -24.4 kcal/mol 
p-value: 0.007757 
 
position  823 
target 5' C   A             G    U 
           GCC AAAC GUUUGGAG AAGA  
           UGG UUUG UAAACCUC UUCU  
miRNA  3' U   A    A               
 
 
target: AT5G52300.2 
length: 2131 
miRNA : ath-miR414
length: 21 
 
mfe: -31.3 kcal/mol 
p-value: 0.000601 
 
position  335 
target 5' A               U    C 
           GAUGAUGAUGAUGAG AUGA  
           CUGCUACUACUACUU UACU  
miRNA  3' A               C      
 
 
target: AT5G52300.2 
length: 2131 
miRNA : ath-miR830*
length: 22 
 
mfe: -24.4 kcal/mol 
p-value: 0.007747 
 
position  820 
target 5' C   A             G    U 
           GCC AAAC GUUUGGAG AAGA  
           UGG UUUG UAAACCUC UUCU  
miRNA  3' U   A    A               
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_45062
AccessionTaxon
NP_001032061Arabidopsis thaliana
NP_194288Arabidopsis thaliana
NP_200043 ( AT5G52300 )Arabidopsis thaliana
NP_200044Arabidopsis thaliana
NP_001065009Oryza sativa Japonica Group
30147.m013744Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF079187.099999999999995E-11385411IPR012418CAP160
PfamPF079189e-14386412IPR012418CAP160