You are querying gene by "AT5G52040".

Locus: AT5G52040 Alias: ATRSP41

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT5G52040 | Chromosome: 5 | Strand: +
Description encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.
Alias
ATRSP41( alias )
Gene model
AT5G52040.1 | From: 21147546 | To: 21150847
AT5G52040.2 | From: 21147546 | To: 21150777
Sequence
AT5G52040.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G52040.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
RNA binding PMID:
cellular_component
spliceosome PMID: 8989882
biological_process
nuclear mRNA splicing, via spliceosome PMID: 8989882
RNA splicing PMID: 16807317
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G52040.3 
length: 1655 
miRNA : ath-miR161.1
length: 21 
 
mfe: -27.1 kcal/mol 
p-value: 0.005124 
 
position  253 
target 5' A       C U       A     U 
           ACCCCGA U UAGUUGC UUUCA  
           UGGGGCU A AUCAGUG AAAGU  
miRNA  3'           C               
 
 
target: AT5G52040.4 
length: 1752 
miRNA : ath-miR161.1
length: 21 
 
mfe: -27.1 kcal/mol 
p-value: 0.005507 
 
position  345 
target 5' A       C U       A     U 
           ACCCCGA U UAGUUGC UUUCA  
           UGGGGCU A AUCAGUG AAAGU  
miRNA  3'           C               
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_23942
AccessionTaxon
NP_001045729Oryza sativa Japonica Group
NP_001078447Arabidopsis thaliana
NP_001154773Arabidopsis thaliana
NP_001154774Arabidopsis thaliana
NP_194280Arabidopsis thaliana
NP_200017Arabidopsis thaliana
NP_851174 ( AT5G52040 )Arabidopsis thaliana
NP_974616Arabidopsis thaliana
estExt_fgenesh1_pg.C_1440043Physcomitrella patens subsp. patens
30147.m014308Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS501029.780141IPR000504RNA recognition motif, RNP-1
PROSITEPS5010216.551274IPR000504RNA recognition motif, RNP-1
PROSITEPS501020.0274IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3301.8e-05355IPR012677Nucleotide-binding, alpha-beta plait
SMARTSM003601e-15370IPR000504RNA recognition motif, RNP-1
SMARTSM003608.90000829418053E-16370IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3301e-16488IPR012677Nucleotide-binding, alpha-beta plait
PfamPF000764.3e-15461IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3301.0999990912079224E-16488IPR012677Nucleotide-binding, alpha-beta plait
PfamPF000763.399999999999999E-12461IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3300.000151061IPR012677Nucleotide-binding, alpha-beta plait
Gene3DG3DSA:3.30.70.3303e-1661148IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS5010215.78463134IPR000504RNA recognition motif, RNP-1
SMARTSM003602.9e-1664130IPR000504RNA recognition motif, RNP-1
PfamPF000761.2e-1365127IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3303e-1667154IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS5010215.78469140IPR000504RNA recognition motif, RNP-1
SMARTSM003602.9e-1670136IPR000504RNA recognition motif, RNP-1
PfamPF000761.2e-1371133IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3303e-1694181IPR012677Nucleotide-binding, alpha-beta plait
Gene3DG3DSA:3.30.70.3303.199998990463549E-1694181IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS5010215.78496167IPR000504RNA recognition motif, RNP-1
PROSITEPS501020.096167IPR000504RNA recognition motif, RNP-1
SMARTSM003602.9e-1697163IPR000504RNA recognition motif, RNP-1
SMARTSM003602.4999981195646483E-1697163IPR000504RNA recognition motif, RNP-1
PfamPF000761.4e-1398160IPR000504RNA recognition motif, RNP-1
PfamPF000761.1E-1098160IPR000504RNA recognition motif, RNP-1