You are querying gene by "AT5G50720".

Locus: AT5G50720 Alias: ATHVA22E

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 12081371

Basic gene information ( show / hide contents )

Locus AT5G50720 | Chromosome: 5 | Strand: -
Description response to abscisic acid stimulus
Alias
ATHVA22E( alias )
Gene model
AT5G50720.1 | From: 20650419 | To: 20651778
Sequence
AT5G50720.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
endomembrane system PMID:
biological_process
response to water deprivation PMID: 12081371
response to cold PMID: 12081371
hyperosmotic salinity response PMID: 12081371
response to abscisic acid stimulus PMID: 12081371
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G50720.1 
length: 650 
miRNA : ath-miR1886.1
length: 21 
 
mfe: -25.9 kcal/mol 
p-value: 0.002826 
 
position  475 
target 5' U                   U 
           AUUUUGUCUUAUUUCUCUU  
           UAAAGUAGAGUGAAGAGAG  
miRNA  3' C                   U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10829
AccessionTaxon
NP_195390Arabidopsis thaliana
143837Chlamydomonas reinhardtii
29646.m001069Ricinus communis
NP_001119048Arabidopsis thaliana
NP_567713Arabidopsis thaliana
NP_568744 ( AT5G50720 )Arabidopsis thaliana
NP_001067939Oryza sativa Japonica Group
estExt_Genewise1.C_4210010Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_4210007Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_3060012Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_25000037Physcomitrella patens subsp. patens
NP_001068230Oryza sativa Japonica Group
0900010006Ostreococcus tauri
gw1.125.32.1Physcomitrella patens subsp. patens
NP_177592Arabidopsis thaliana
estExt_Genewise1.C_3060059Physcomitrella patens subsp. patens
30147.m014111Ricinus communis
NP_001048116Oryza sativa Japonica Group
NP_001057204Oryza sativa Japonica Group
NP_181810Arabidopsis thaliana
estExt_gwp_gw1.C_600026Physcomitrella patens subsp. patens
29993.m001046Ricinus communis
NP_001060029Oryza sativa Japonica Group
30147.m014467Ricinus communis
NP_001062004Oryza sativa Japonica Group
NP_001052759Oryza sativa Japonica Group
NP_001066204Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF031345e-3212100IPR004345TB2/DP1/HVA22 related protein
PANTHERPTHR123002.6e-5615106IPR004345TB2/DP1/HVA22 related protein