You are querying gene by "AT5G50600".

Locus: AT5G50600 Alias: AtHSD1

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 17616511
brassinosteroidGeneOntology - response to brassinosteroid stimulus 17616511

Basic gene information ( show / hide contents )

Locus AT5G50600 | Chromosome: 5 | Strand: -
Description response to abscisic acid stimulus
Alias
AtHSD1( alias )
Gene model
AT5G50600.1 | From: 20606928 | To: 20608915
Sequence
AT5G50600.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
oxidoreductase activity PMID:
cellular_component
endomembrane system PMID:
biological_process
response to brassinosteroid stimulus PMID: 17616511
response to abscisic acid stimulus PMID: 17616511
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G50600.1 
length: 1301 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -21.4 kcal/mol 
p-value: 0.084382 
 
position  659 
target 5' U                    G 
           UGAGACG AUGAGA AUUGA  
           ACUUUGC UGUUCU UGACU  
miRNA  3'         U      U     A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11495
AccessionTaxon
NP_001154667Arabidopsis thaliana
NP_190319Arabidopsis thaliana
NP_190320Arabidopsis thaliana
NP_199871Arabidopsis thaliana
NP_680417Arabidopsis thaliana
NP_001052642Oryza sativa Japonica Group
NP_001066740Oryza sativa Japonica Group
30147.m014464Ricinus communis
NP_568742Arabidopsis thaliana
NP_680418 ( AT5G50600 )Arabidopsis thaliana
estExt_gwp_gw1.C_940053Physcomitrella patens subsp. patens
30147.m014465Ricinus communis
NP_001046935Oryza sativa Japonica Group
NP_001067940Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR194100.018287IPR002198Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7202.999987504457202E-6045318IPR016040NAD(P)-binding domain
PfamPF001064.1999999999999953E-2948214IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000815.699997087839525E-244966IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000803.799998626447906E-8124135IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000815.699997087839525E-24124135IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000815.699997087839525E-24171187IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000803.799998626447906E-8177185IPR002198Short-chain dehydrogenase/reductase SDR
PROSITEPS000610.0184212IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000803.799998626447906E-8197216IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000815.699997087839525E-24197216IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000815.699997087839525E-24217234IPR002347Glucose/ribitol dehydrogenase