You are querying gene by "AT5G49980".

Locus: AT5G49980 Alias: AFB5

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction TIR5 homolog F-box protein 16920877

Basic gene information ( show / hide contents )

Locus AT5G49980 | Chromosome: 5 | Strand: -
Description TIR5 homolog F-box protein
Alias
AFB5( alias )
Gene model
AT5G49980.1 | From: 20351190 | To: 20353891
Sequence
AT5G49980.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
ubiquitin-protein ligase activity PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
afb5 16920877 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G49980.1 
length: 2450 
miRNA : ath-miR414
length: 21 
 
mfe: -25.3 kcal/mol 
p-value: 0.011149 
 
position  2096 
target 5' A   U  U          U     U 
           UGA UG UGAUGAUGAA GAUGG  
           ACU GC ACUACUACUU CUACU  
miRNA  3'        U                  
 
 
target: AT5G49980.1 
length: 2450 
miRNA : ath-miR858
length: 21 
 
mfe: -23.8 kcal/mol 
p-value: 0.082206 
 
position  767 
target 5' U                     U 
           GAGGUC A CGGAUGAUGAAG  
           UUCCAG U GUCUGUUGCUUU  
miRNA  3'        C U              
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G49980AT1G04240negativeprotein degradationN/Amutance17900969
AT5G49980AT1G04550negativeprotein degradationN/Amutance17900969
AT5G49980AT1G15580negativeprotein degradationN/Amutance17900969
AT5G49980AT2G32410negativeprotein degradationN/Amutance17900969
AT5G49980AT2G38120negativeprotein degradationN/Amutance17900969
AT5G49980AT3G15540negativeprotein degradationN/Amutance17900969
AT5G49980AT4G14550negativeprotein degradationN/Amutance17900969
AT5G49980AT4G14560negativeprotein degradationN/Amutance17900969
AT5G49980AT5G25890negativeprotein degradationN/Amutance17900969
AT5G49980AT5G43700negativeprotein degradationN/Amutance17900969
AT5G49980AUX3negativeprotein degradationN/Amutance17900969

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_45604
AccessionTaxon
NP_567702Arabidopsis thaliana
NP_568718 ( AT5G49980 )Arabidopsis thaliana
NP_974607Arabidopsis thaliana
NP_001048183Oryza sativa Japonica Group
NP_001067865Oryza sativa Japonica Group
29908.m006223Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF813832.5E-63485IPR022364F-box domain, Skp2-like