You are querying gene by "AT5G49620".

Locus: AT5G49620 Alias: AtMYB78

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 16258012

Basic gene information ( show / hide contents )

Locus AT5G49620 | Chromosome: 5 | Strand: -
Description response to abscisic acid stimulus
Alias
AtMYB78( alias )
Gene model
AT5G49620.1 | From: 20154620 | To: 20156610
Sequence
AT5G49620.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
biological_process
regulation of transcription, DNA-dependent PMID:
response to salt stress PMID: 16463103
response to abscisic acid stimulus PMID: 16258012
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G49620.1 
length: 1021 
miRNA : ath-miR776
length: 21 
 
mfe: -21.8 kcal/mol 
p-value: 0.032800 
 
position  92 
target 5' G    G                 G 
           GACA UUGA GGAAGAUUUAGA  
           UUGU AGUU UCUUCUGAAUCU  
miRNA  3'           A              
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_51500
AccessionTaxon
NP_187301Arabidopsis thaliana
NP_199773 ( AT5G49620 )Arabidopsis thaliana
NP_001042810Oryza sativa Japonica Group
NP_001054560Oryza sativa Japonica Group
30076.m004607Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR106418.100007343233418E-8722286IPR015495Myb transcription factor
PROSITEPS512940.02379IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.608.49999291746376E-152678IPR012287Homeodomain-related
SMARTSM007172.79999889404114E-152777IPR001005SANT, DNA-binding
PfamPF002492.8999999999999994E-122875IPR014778Myb, DNA-binding
SuperFamilySSF466895.9E-182898IPR009057Homeodomain-like
SMARTSM007175.2000008900333613E-1480128IPR001005SANT, DNA-binding
PROSITEPS512940.080130IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PfamPF002493.900000000000007E-1181124IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.601.899998598658431E-1582130IPR012287Homeodomain-related
SuperFamilySSF466894.7E-987137IPR009057Homeodomain-like