You are querying gene by "AT5G47370".

Locus: AT5G47370 Alias: HAT2

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - auxin mediated signaling pathway 12492842

Basic gene information ( show / hide contents )

Locus AT5G47370 | Chromosome: 5 | Strand: -
Description auxin mediated signaling pathway
Alias
HAT2( alias )
Gene model
AT5G47370.1 | From: 19233539 | To: 19235136
Sequence
AT5G47370.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 12492842
transcription repressor activity PMID: 12492842
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
unidimensional cell growth PMID: 12492842
response to auxin stimulus PMID: 12492842
regulation of transcription, DNA-dependent PMID:
auxin mediated signaling pathway PMID: 12492842
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G47370.1 
length: 1284 
miRNA : ath-miR844*
length: 21 
 
mfe: -26.1 kcal/mol 
p-value: 0.001987 
 
position  1060 
target 5' U      C        C    G 
           GCUGGU AGGUGGCU AUGG  
           UGAUCA UCUACCGA UAUU  
miRNA  3' U      U        A      
 
 
target: AT5G47370.1 
length: 1284 
miRNA : ath-miR847
length: 21 
 
mfe: -25.7 kcal/mol 
p-value: 0.022544 
 
position  507 
target 5' C      C        A     G 
           CAUUAG GGGAAGAG AGUGA  
           GUAGUU UUCUUCUC UCACU  
miRNA  3'        C        C       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_68259
AccessionTaxon
NP_193476Arabidopsis thaliana
NP_193411Arabidopsis thaliana
NP_199548 ( AT5G47370 )Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF046181.2000000000000005E-21191IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466899.6E-19115191IPR009057Homeodomain-like
PROSITEPS500710.0125185IPR001356Homeobox
SMARTSM003894.899999517823589E-16127189IPR001356Homeobox
PfamPF000466.80000000000001E-13129183IPR001356Homeobox
Gene3DG3DSA:1.10.10.602.299999356653938E-16131183IPR012287Homeodomain-related
PROSITEPS000270.0160183IPR017970Homeobox, conserved site
PfamPF021831.499999999999999E-11185227IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.199984144203578E-24185228IPR003106Leucine zipper, homeobox-associated