You are querying gene by "AT5G45710".

Locus: AT5G45710 Alias: AT-HSFA4C

Hormone Evidence Function category Gene Description PMID
ethyleneMutant Hormone signal transduction AT-HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, HSFA4C, MRA19.11, MRA19_11, RHA1, ROOT HANDEDNESS 1 19704429

Basic gene information ( show / hide contents )

Locus AT5G45710 | Chromosome: 5 | Strand: +
Description AT-HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, HSFA4C, MRA19.11, MRA19_11, RHA1, ROOT HANDEDNESS 1
Alias
AT-HSFA4C( alias )
HSFA4C( alias )
RHA1( alias )
Gene model
AT5G45710.2 | From: 18558096 | To: 18560090
AT5G45710.1 | From: 18558077 | To: 18560090
Sequence
AT5G45710.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G45710.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
regulation of transcription, DNA-dependent PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   ethylene   ]

Genotype PMID Type
rha1 19704429 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G45710.1 
length: 1515 
miRNA : ath-miR831
length: 22 
 
mfe: -24.7 kcal/mol 
p-value: 0.022804 
 
position  691 
target 5' A    C    C            G 
           AAGA GGAG AUGGAG GAUCA  
           UUCU UCUC UGCUUC CUAGU  
miRNA  3' G         A      U       
 
 
target: AT5G45710.2 
length: 1589 
miRNA : ath-miR831
length: 22 
 
mfe: -24.7 kcal/mol 
p-value: 0.024052 
 
position  765 
target 5' A    C    C            G 
           AAGA GGAG AUGGAG GAUCA  
           UUCU UCUC UGCUUC CUAGU  
miRNA  3' G         A      U       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_57002
AccessionTaxon
NP_001044247Oryza sativa Japonica Group
NP_199383 ( AT5G45710 )Arabidopsis thaliana
NP_974891Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.10.106.8e-358103IPR011991Winged helix-turn-helix transcription repressor DNA-binding
SMARTSM004153.6e-5710103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567e-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2e-3114105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567e-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITEPS00434NA5377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567e-196577IPR000232Heat shock factor (HSF)-type, DNA-binding