You are querying gene by "AT5G44200".

Locus: AT5G44200 Alias: ATCBP20

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing. 18829588

Basic gene information ( show / hide contents )

Locus AT5G44200 | Chromosome: 5 | Strand: -
Description Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing.
Alias
ATCBP20( alias )
CBP20( alias )
Gene model
AT5G44200.1 | From: 17819041 | To: 17821289
AT5G44200.2 | From: 17819041 | To: 17821357
Sequence
AT5G44200.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G44200.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
RNA binding PMID:
RNA cap binding PMID: 11525733
cellular_component
mRNA cap complex PMID: 0012427994
biological_process
RNA metabolic process PMID: 11867224
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
cbp20/cbp80 18829588 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G44200.1 
length: 1212 
miRNA : ath-miR414
length: 21 
 
mfe: -33.1 kcal/mol 
p-value: 0.000111 
 
position  925 
target 5' C     C              U 
           GAUGA GAUGGUGAAGAUGA  
           CUGCU CUACUACUUCUACU  
miRNA  3' A     A                
 
 
target: AT5G44200.2 
length: 1182 
miRNA : ath-miR414
length: 21 
 
mfe: -33.1 kcal/mol 
p-value: 0.000107 
 
position  895 
target 5' C     C              U 
           GAUGA GAUGGUGAAGAUGA  
           CUGCU CUACUACUUCUACU  
miRNA  3' A     A                
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11501
AccessionTaxon
NP_001078705 ( AT5G44200 )Arabidopsis thaliana
NP_199233Arabidopsis thaliana
169371Chlamydomonas reinhardtii
NP_001047412Oryza sativa Japonica Group
e_gw1.14.00.253.1Ostreococcus tauri
29983.m003140Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.70.3301.4999964819631751E-366150IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS501020.034112IPR000504RNA recognition motif, RNP-1
SMARTSM003601.2000011745813376E-2335108IPR000504RNA recognition motif, RNP-1
PfamPF000762.800000000000005E-1336106IPR000504RNA recognition motif, RNP-1