You are querying gene by "AT5G43940".

Locus: AT5G43940 Alias: ADH2

Hormone Evidence Function category Gene Description PMID
salicylic acidMutant Hormone signal transduction Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility. 19806166

Basic gene information ( show / hide contents )

Locus AT5G43940 | Chromosome: 5 | Strand: +
Description Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.
Alias
ADH2( alias )
GSNOR( alias )
HOT5( alias )
Gene model
AT5G43940.1 | From: 17701418 | To: 17703755
Sequence
AT5G43940.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
formaldehyde dehydrogenase (glutathione) activity PMID: 9215914
biological_process
response to wounding PMID: 12753920
formaldehyde metabolic process PMID: 8944774
KEGG pathway This gene participates in 8 pathways:
Pathway Enzyme
Glycolysis / Gluconeogenesis alcohol dehydrogenase
Fatty acid metabolism alcohol dehydrogenase
Bile acid biosynthesis alcohol dehydrogenase
Glycerolipid metabolism alcohol dehydrogenase
Tyrosine metabolism alcohol dehydrogenase
1- and 2-Methylnaphthalene degradation alcohol dehydrogenase
Metabolism of xenobiotics by cytochrome P450 alcohol dehydrogenase
Methane metabolism S-(hydroxymethyl)glutathione dehydrogenase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   salicylic acid   ]

Genotype PMID Type
par2-1 19806166 mutant
gsnor1-3 19806166 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G43940.1 
length: 1363 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -21.5 kcal/mol 
p-value: 0.084292 
 
position  233 
target 5' U               U C   A 
           UGGAGCG GCAAGGA C UGA  
           ACUUUGC UGUUCUU G ACU  
miRNA  3'         U       U     A 
 
 
target: AT5G43940.1 
length: 1363 
miRNA : ath-miR839
length: 21 
 
mfe: -28.1 kcal/mol 
p-value: 0.002645 
 
position  290 
target 5' U    U  U      U       A 
           GGGA UG UGAGAG GUUGGUG  
           CCCU GC ACUUUC CAACCAU  
miRNA  3'      U  U                
 
 
target: AT5G43940.1 
length: 1363 
miRNA : ath-miR854a
length: 21 
 
mfe: -31.0 kcal/mol 
p-value: 0.005937 
 
position  27 
target 5' U               U      U 
           CUCUUUCUCUCUAUC CUC UC  
           GAGGAGGAGGGAUAG GAG AG  
miRNA  3'                     U    
 
 
target: AT5G43940.1 
length: 1363 
miRNA : ath-miR854b
length: 21 
 
mfe: -31.0 kcal/mol 
p-value: 0.004356 
 
position  27 
target 5' U               U      U 
           CUCUUUCUCUCUAUC CUC UC  
           GAGGAGGAGGGAUAG GAG AG  
miRNA  3'                     U    
 
 
target: AT5G43940.1 
length: 1363 
miRNA : ath-miR854c
length: 21 
 
mfe: -31.0 kcal/mol 
p-value: 0.005368 
 
position  27 
target 5' U               U      U 
           CUCUUUCUCUCUAUC CUC UC  
           GAGGAGGAGGGAUAG GAG AG  
miRNA  3'                     U    
 
 
target: AT5G43940.1 
length: 1363 
miRNA : ath-miR854d
length: 21 
 
mfe: -31.0 kcal/mol 
p-value: 0.004530 
 
position  27 
target 5' U               U      U 
           CUCUUUCUCUCUAUC CUC UC  
           GAGGAGGAGGGAUAG GAG AG  
miRNA  3'                     U    
 
 
target: AT5G43940.1 
length: 1363 
miRNA : ath-miR854e
length: 21 
 
mfe: -31.0 kcal/mol 
p-value: 0.005633 
 
position  27 
target 5' U               U      U 
           CUCUUUCUCUCUAUC CUC UC  
           GAGGAGGAGGGAUAG GAG AG  
miRNA  3'                     U    
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10675
AccessionTaxon
NP_199207 ( AT5G43940 )Arabidopsis thaliana
129874Chlamydomonas reinhardtii
NP_001048503Oryza sativa Japonica Group
e_gw1.15.00.170.1Ostreococcus tauri
e_gw1.142.35.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_650152Physcomitrella patens subsp. patens
29885.m000144Ricinus communis
NP_568975Arabidopsis thaliana
NP_851257Arabidopsis thaliana
NP_177837Arabidopsis thaliana
NP_001067484Oryza sativa Japonica Group
NP_001067485Oryza sativa Japonica Group
27985.m000881Ricinus communis
27985.m000885Ricinus communis
28353.m000053Ricinus communis
NP_001060809Oryza sativa Japonica Group
e_gw1.95.79.1Physcomitrella patens subsp. patens
30225.m001703Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF501294.8E-822193IPR011032GroES-like
PANTHERPTHR116950.06228IPR002085Alcohol dehydrogenase superfamily, zinc-containing
TIGRFAMTIGR028180.09377IPR014183Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase
PfamPF082404.700000000000006E-2435162IPR013154Alcohol dehydrogenase GroES-like
PROSITEPS000590.06882IPR002328Alcohol dehydrogenase, zinc-containing, conserved site
PfamPF001071.1E-19206330IPR013149Alcohol dehydrogenase, C-terminal
SuperFamilySSF501292.0E-14328377IPR011032GroES-like