You are querying gene by "AT5G43860".

Locus: AT5G43860 Alias: ATCLH2

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - response to jasmonic acid stimulus 10611389

Basic gene information ( show / hide contents )

Locus AT5G43860 | Chromosome: 5 | Strand: +
Description response to jasmonic acid stimulus
Alias
ATCLH2( alias )
Gene model
AT5G43860.1 | From: 17647677 | To: 17649539
Sequence
AT5G43860.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
chlorophyllase activity PMID: 10611389
cellular_component
chloroplast PMID: 10611389
biological_process
chlorophyll catabolic process PMID: 10611389
response to jasmonic acid stimulus PMID: 10611389
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Porphyrin and chlorophyll metabolism chlorophyllase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G43860.1 
length: 1127 
miRNA : ath-miR447a
length: 22 
 
mfe: -26.0 kcal/mol 
p-value: 0.017096 
 
position  739 
target 5' C     U           G G  G 
           CAGCA GGCAUUUCGUU C AA  
           GUUGU UUGUAGAGCAG G UU  
miRNA  3'       U           G G    
 
 
target: AT5G43860.1 
length: 1127 
miRNA : ath-miR447b
length: 22 
 
mfe: -26.0 kcal/mol 
p-value: 0.013044 
 
position  739 
target 5' C     U           G G  G 
           CAGCA GGCAUUUCGUU C AA  
           GUUGU UUGUAGAGCAG G UU  
miRNA  3'       U           G G    
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_51745
AccessionTaxon
NP_199199 ( AT5G43860 )Arabidopsis thaliana
NP_001064620Oryza sativa Japonica Group
e_gw1.9.119.1Physcomitrella patens subsp. patens
29844.m003227Ricinus communis
195539Chlamydomonas reinhardtii
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0381280.01318IPR017395Chlorophyllase, chloroplast
PfamPF072240.02301IPR010821Chlorophyllase-like