You are querying gene by "AT5G40330".

Locus: AT5G40330 Alias: ATMYB23

Hormone Evidence Function category Gene Description PMID
Jasmonic acidMutant Hormone signal transduction Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1. 19234066

Basic gene information ( show / hide contents )

Locus AT5G40330 | Chromosome: 5 | Strand: +
Description Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.
Alias
ATMYB23( alias )
ATMYBRTF( alias )
MYB23( alias )
Gene model
AT5G40330.1 | From: 16144953 | To: 16146883
Sequence
AT5G40330.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
protein binding PMID: 15728674
transcription factor activity PMID:
biological_process
trichome differentiation PMID: 11437443
trichome branching PMID: 15728674
regulation of transcription PMID: 11118137
trichome patterning PMID: 15728674
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
gl1-2 myb23-1 19234066 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G40330.1 
length: 971 
miRNA : ath-miR867
length: 21 
 
mfe: -21.8 kcal/mol 
p-value: 0.014707 
 
position  194 
target 5' A    C           C   A 
           UCCU AUGGAUUAUGU CGA  
           AGGA UAUUUGGUACA GUU  
miRNA  3' A    U           A     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_58737
AccessionTaxon
NP_189430Arabidopsis thaliana
NP_196979Arabidopsis thaliana
NP_198849 ( AT5G40330 )Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS512940.0961IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PANTHERPTHR106414.3000017064587875E-9810217IPR015495Myb transcription factor
Gene3DG3DSA:1.10.10.604.099995990457497E-161264IPR012287Homeodomain-related
SMARTSM007171.5999988934925166E-151363IPR001005SANT, DNA-binding
PfamPF002494.800000000000009E-131461IPR014778Myb, DNA-binding
SuperFamilySSF466891.3E-231483IPR009057Homeodomain-like
PROSITEPS512940.062116IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SMARTSM007171.2000011745813375E-1866114IPR001005SANT, DNA-binding
PfamPF002491.0E-1367112IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.605.999990440890852E-1868116IPR012287Homeodomain-related
SuperFamilySSF466898.1E-1173123IPR009057Homeodomain-like