You are querying gene by "AT5G37020".

Locus: AT5G37020 Alias: ARF8

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction transcription factor 15469491 17021043
GeneOntology - response to auxin stimulus 16107481

Basic gene information ( show / hide contents )

Locus AT5G37020 | Chromosome: 5 | Strand: +
Description transcription factor
Alias
ARF8( alias )
Gene model
AT5G37020.1 | From: 14647258 | To: 14651617
AT5G37020.2 | From: 14647258 | To: 14651617
Sequence
AT5G37020.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G37020.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
flower development PMID: 16107481
response to auxin stimulus PMID: 16107481
fruit development PMID: 16829592
regulation of transcription, DNA-dependent PMID: 10318972
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
ARF8-D 15469491 mutant
arf6arf8 16107481 17021043 mutant
arf8-4 15469491 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G37020.1 
length: 2840 
miRNA : ath-miR776
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.073370 
 
position  2492 
target 5' U     A         U A    G 
           GCAUC AAUGGGAGA C UGGA  
           UGUAG UUAUCUUCU G AUCU  
miRNA  3' U                 A      
 
 
target: AT5G37020.1 
length: 2840 
miRNA : ath-miR847
length: 21 
 
mfe: -26.8 kcal/mol 
p-value: 0.029591 
 
position  157 
target 5' G    U         A    U 
           GUCA GAAGGAGAG AGUG  
           UAGU CUUCUUCUC UCAC  
miRNA  3' G    U         C    U 
 
 
target: AT5G37020.1 
length: 2840 
miRNA : ath-miR863-5p
length: 21 
 
mfe: -25.8 kcal/mol 
p-value: 0.023223 
 
position  143 
target 5' G                U     A 
           AUUG GGUCAACAGGG CAUGA  
           UAAC CUAGUUGUUCU GUAUU  
miRNA  3'      U                   
 
 
target: AT5G37020.1 
length: 2840 
miRNA : ath-miR869.1
length: 21 
 
mfe: -23.5 kcal/mol 
p-value: 0.055112 
 
position  133 
target 5' U       U            C 
           CAACAUC GGAUUGGGUCAA  
           GUUGUGG CUUAACUUGGUU  
miRNA  3'         U            A 
 
 
target: AT5G37020.2 
length: 2844 
miRNA : ath-miR776
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.073497 
 
position  2496 
target 5' U     A         U A    G 
           GCAUC AAUGGGAGA C UGGA  
           UGUAG UUAUCUUCU G AUCU  
miRNA  3' U                 A      
 
 
target: AT5G37020.2 
length: 2844 
miRNA : ath-miR847
length: 21 
 
mfe: -26.8 kcal/mol 
p-value: 0.029622 
 
position  157 
target 5' G    U         A    U 
           GUCA GAAGGAGAG AGUG  
           UAGU CUUCUUCUC UCAC  
miRNA  3' G    U         C    U 
 
 
target: AT5G37020.2 
length: 2844 
miRNA : ath-miR863-5p
length: 21 
 
mfe: -25.8 kcal/mol 
p-value: 0.023258 
 
position  143 
target 5' G                U     A 
           AUUG GGUCAACAGGG CAUGA  
           UAAC CUAGUUGUUCU GUAUU  
miRNA  3'      U                   
 
 
target: AT5G37020.2 
length: 2844 
miRNA : ath-miR869.1
length: 21 
 
mfe: -23.5 kcal/mol 
p-value: 0.055181 
 
position  133 
target 5' U       U            C 
           CAACAUC GGAUUGGGUCAA  
           GUUGUGG CUUAACUUGGUU  
miRNA  3'         U            A 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G37020AT1G74740PositivetransciptN/Amolecular18599455
AT5G37020AT2G14610negativetransciptN/Abiochem17276977
AT5G37020AT4G30610PositivetransciptN/AGO/othersN/A
AT5G37020AT5G18560PositivetransciptN/Amutance17630277
AT5G37020CBF/DREBnegativetransciptN/Abiochem17276977

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_19971
AccessionTaxon
NP_001031115Arabidopsis thaliana
NP_001078672Arabidopsis thaliana
NP_174323Arabidopsis thaliana
NP_198518 ( AT5G37020 )Arabidopsis thaliana
NP_001045993Oryza sativa Japonica Group
NP_001054222Oryza sativa Japonica Group
NP_001058360Oryza sativa Japonica Group
NP_001067266Oryza sativa Japonica Group
e_gw1.119.103.1Physcomitrella patens subsp. patens
e_gw1.133.91.1Physcomitrella patens subsp. patens
e_gw1.65.212.1Physcomitrella patens subsp. patens
e_gw1.86.122.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1630077Physcomitrella patens subsp. patens
gw1.6.284.1Physcomitrella patens subsp. patens
29599.m000177Ricinus communis
29769.m000463Ricinus communis
30170.m014161Ricinus communis
NP_173414Arabidopsis thaliana
NP_001054169Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023621.9e-21126226IPR003340Transcriptional factor B3
PROSITEPS5086312.012126228IPR003340Transcriptional factor B3
PfamPF023621.3999999999999999E-18126226IPR003340Transcriptional factor B3
PROSITEPS508630.0126228IPR003340Transcriptional factor B3
PfamPF065071e-33252335IPR010525Auxin response factor
PfamPF065077.499999999999999E-31252335IPR010525Auxin response factor
PfamPF023097.8e-19700793IPR003311AUX/IAA protein
PfamPF023091.600000000000001E-11700773IPR003311AUX/IAA protein
PROSITEPS5096225.333706788IPR011525Aux/IAA-ARF-dimerisation
PROSITEPS509620.0706773IPR011525Aux/IAA-ARF-dimerisation