You are querying gene by "AT5G27320".

Locus: AT5G27320 Alias: ATGID1C

Hormone Evidence Function category Gene Description PMID
gibberellinMutant Hormone receptor Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). 16709201
GeneOntology - positive regulation of gibberellic acid mediated signaling 17194763

Basic gene information ( show / hide contents )

Locus AT5G27320 | Chromosome: 5 | Strand: +
Description Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1).
Alias
ATGID1C( alias )
GID1C( alias )
Gene model
AT5G27320.1 | From: 9629095 | To: 9631213
Sequence
AT5G27320.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
hydrolase activity PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
positive regulation of gibberellic acid mediated signaling PMID: 17194763
raffinose family oligosaccharide biosynthetic process PMID: 16709201
gibberellin-mediated signaling PMID: 17521411
floral organ morphogenesis PMID: 17194763
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   gibberellin   ]

Genotype PMID Type
gid1a-1 gid1b-1 gid1c-2 1913748 mutant
gid1a-1 gid1b-1 gid1c-1 17194763 mutant
gid1a-1 gid1c-1 17194763 mutant
gid1c-1 17194763 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G27320.1 
length: 1666 
miRNA : ath-miR167a
length: 21 
 
mfe: -28.4 kcal/mol 
p-value: 0.009787 
 
position  415 
target 5' C  C G               C 
           AG U AUGCUGGCA CUUCA  
           UC A UACGACCGU GAAGU  
miRNA  3' A  U G         C       
 
 
target: AT5G27320.1 
length: 1666 
miRNA : ath-miR167b
length: 21 
 
mfe: -28.4 kcal/mol 
p-value: 0.009004 
 
position  415 
target 5' C  C G               C 
           AG U AUGCUGGCA CUUCA  
           UC A UACGACCGU GAAGU  
miRNA  3' A  U G         C       
 
 
target: AT5G27320.1 
length: 1666 
miRNA : ath-miR167d
length: 22 
 
mfe: -33.3 kcal/mol 
p-value: 0.001784 
 
position  413 
target 5' A    C G               C 
           CCAG U AUGCUGGCA CUUCA  
           GGUC A UACGACCGU GAAGU  
miRNA  3'      U G         C       
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G27320AT1G14920negativeprotein degradationN/Amutance12271067
AT5G27320AT1G66350negativeprotein degradationN/Amutance12183174
AT5G27320AT2G01570negativeprotein degradationN/Amutance9215910
AT5G27320AT3G03450negativeprotein degradationN/Amutance11118137
AT5G27320AT5G17490negativeprotein degradationN/Amutance11118137
AT5G27320SUB1CPositiveotherN/Amolecular18936491

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10330
AccessionTaxon
NP_197744Arabidopsis thaliana
NP_001057470Oryza sativa Japonica Group
NP_001060440Oryza sativa Japonica Group
NP_001060441Oryza sativa Japonica Group
NP_001060443Oryza sativa Japonica Group
NP_001067576Oryza sativa Japonica Group
NP_001067581Oryza sativa Japonica Group
e_gw1.37.179.1Physcomitrella patens subsp. patens
29910.m000927Ricinus communis
29910.m000966Ricinus communis
NP_001042057Oryza sativa Japonica Group
NP_001042062Oryza sativa Japonica Group
NP_001042063Oryza sativa Japonica Group
NP_001051515Oryza sativa Japonica Group
NP_001058947Oryza sativa Japonica Group
NP_001058948Oryza sativa Japonica Group
NP_001058949Oryza sativa Japonica Group
NP_001058950Oryza sativa Japonica Group
e_gw1.297.55.1Physcomitrella patens subsp. patens
NP_187163Arabidopsis thaliana
NP_198084 ( AT5G27320 )Arabidopsis thaliana
30008.m000796Ricinus communis
NP_001055520Oryza sativa Japonica Group
e_gw1.25.238.1Physcomitrella patens subsp. patens
e_gw1.33.112.1Physcomitrella patens subsp. patens
e_gw1.37.238.1Physcomitrella patens subsp. patens
e_gw1.91.190.1Physcomitrella patens subsp. patens
30128.m008695Ricinus communis
NP_196275Arabidopsis thaliana
NP_850782Arabidopsis thaliana
29333.m001098Ricinus communis
29755.m000440Ricinus communis
NP_001067580Oryza sativa Japonica Group
29983.m003304Ricinus communis
29848.m004636Ricinus communis
29929.m004742Ricinus communis
NP_001058951Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF078595.79999999999997E-57107320IPR013094Alpha/beta hydrolase fold-3
PROSITEPS011730.0107123IPR002168Lipase, GDXG, active site
PROSITEPS011740.0183195IPR002168Lipase, GDXG, active site