You are querying gene by "AT5G26780".

Locus: AT5G26780 Alias: SHM2

Hormone Evidence Function category Gene Description PMID
salicylic acidMutant Hormone signal transduction Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1. 19279211

Basic gene information ( show / hide contents )

Locus AT5G26780 | Chromosome: 5 | Strand: +
Description Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1.
Alias
SHM2( alias )
Gene model
AT5G26780.1 | From: 9418198 | To: 9422159
AT5G26780.3 | From: 9418198 | To: 9422094
AT5G26780.2 | From: 9418198 | To: 9422154
Sequence
AT5G26780.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G26780.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G26780.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
glycine hydroxymethyltransferase activity PMID:
cellular_component
mitochondrion PMID: 14671022
biological_process
glycine metabolic process PMID:
L-serine metabolic process PMID:
KEGG pathway This gene participates in 5 pathways:
Pathway Enzyme
Methane metabolism glycine hydroxymethyltransferase
Glycine, serine and threonine metabolism glycine hydroxymethyltransferase
Lysine degradation glycine hydroxymethyltransferase
Cyanoamino acid metabolism glycine hydroxymethyltransferase
One carbon pool by folate glycine hydroxymethyltransferase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   salicylic acid   ]

Genotype PMID Type
gri 19279211 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G26780.1 
length: 2001 
miRNA : ath-miR172a
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.031243 
 
position  533 
target 5' U      U U            A 
           GUGCAG C UUAUCAGGA UC  
           UACGUC G AGUAGUUCU AG  
miRNA  3'          U         A  A 
 
 
target: AT5G26780.1 
length: 2001 
miRNA : ath-miR172b
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.031736 
 
position  533 
target 5' U      U U            A 
           GUGCAG C UUAUCAGGA UC  
           UACGUC G AGUAGUUCU AG  
miRNA  3'          U         A  A 
 
 
target: AT5G26780.2 
length: 2044 
miRNA : ath-miR172a
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.031963 
 
position  533 
target 5' U      U U            A 
           GUGCAG C UUAUCAGGA UC  
           UACGUC G AGUAGUUCU AG  
miRNA  3'          U         A  A 
 
 
target: AT5G26780.2 
length: 2044 
miRNA : ath-miR172b
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.032512 
 
position  533 
target 5' U      U U            A 
           GUGCAG C UUAUCAGGA UC  
           UACGUC G AGUAGUUCU AG  
miRNA  3'          U         A  A 
 
 
target: AT5G26780.3 
length: 2072 
miRNA : ath-miR172a
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.032430 
 
position  533 
target 5' U      U U            A 
           GUGCAG C UUAUCAGGA UC  
           UACGUC G AGUAGUUCU AG  
miRNA  3'          U         A  A 
 
 
target: AT5G26780.3 
length: 2072 
miRNA : ath-miR172b
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.033016 
 
position  533 
target 5' U      U U            A 
           GUGCAG C UUAUCAGGA UC  
           UACGUC G AGUAGUUCU AG  
miRNA  3'          U         A  A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10170
AccessionTaxon
NP_195506Arabidopsis thaliana
NP_568488Arabidopsis thaliana
NP_851080 ( AT5G26780 )Arabidopsis thaliana
NP_851081Arabidopsis thaliana
194461Chlamydomonas reinhardtii
196354Chlamydomonas reinhardtii
NP_001051211Oryza sativa Japonica Group
e_gw1.03.00.206.1Ostreococcus tauri
e_gw1.21.48.1Physcomitrella patens subsp. patens
e_gw1.79.34.1Physcomitrella patens subsp. patens
28333.m000569Ricinus communis
29596.m000695Ricinus communis
NP_001119098Arabidopsis thaliana
NP_567895Arabidopsis thaliana
196400Chlamydomonas reinhardtii
fgenesh1_pg.C_Chr_19.0001000017Ostreococcus tauri
e_gw1.176.14.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1760048Physcomitrella patens subsp. patens
30185.m000949Ricinus communis
NP_001066640Oryza sativa Japonica Group
NP_001067846Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_14.00010266Ostreococcus tauri
29629.m001438Ricinus communis
NP_193125Arabidopsis thaliana
NP_193129Arabidopsis thaliana
estExt_gwp_gw1.C_2910018Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0004120.029512IPR001085Serine hydroxymethyltransferase
PIRPIRSF0004120.029528IPR001085Serine hydroxymethyltransferase
SuperFamilySSF533830.036511IPR015424Pyridoxal phosphate-dependent transferase, major domain
SuperFamilySSF533830.036527IPR015424Pyridoxal phosphate-dependent transferase, major domain
PfamPF004640.055452IPR001085Serine hydroxymethyltransferase
PfamPF004640.055468IPR001085Serine hydroxymethyltransferase
PANTHERPTHR116800.057516IPR001085Serine hydroxymethyltransferase
PANTHERPTHR116800.057532IPR001085Serine hydroxymethyltransferase
Gene3DG3DSA:3.40.640.103.300019761171567E-10184357IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Gene3DG3DSA:3.40.640.103.300019761171567E-10184357IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
PROSITEPS000960.0278294IPR019798Serine hydroxymethyltransferase, pyridoxal phosphate binding site
PROSITEPS000960.0278294IPR019798Serine hydroxymethyltransferase, pyridoxal phosphate binding site