You are querying gene by "AT5G25890".

Locus: AT5G25890 Alias: IAA28

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction 11251090
GeneOntology - response to auxin stimulus 11251090

Basic gene information ( show / hide contents )

Locus AT5G25890 | Chromosome: 5 | Strand: +
Description
Alias
IAA28( alias )
IAR2( alias )
Gene model
AT5G25890.1 | From: 9033418 | To: 9034837
Sequence
AT5G25890.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 11118137
cellular_component
intracellular PMID:
biological_process
response to auxin stimulus PMID: 11251090
lateral root morphogenesis PMID: 11251090
regulation of translation PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
iaa28-1/iar2-1 11251090 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G25890.1 
length: 873 
miRNA : ath-miR847
length: 21 
 
mfe: -28.6 kcal/mol 
p-value: 0.006021 
 
position  272 
target 5' G  G          A      U 
           AU AAGAAGAAGG GAGUGA  
           UA UUCUUCUUCU CUCACU  
miRNA  3' G  G          C        
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G25890AT1G19220negativeotherN/Amutance17900969
AT5G25890AT1G19850negativeotherN/Amutance17900969
AT5G25890AT1G30330negativeotherN/Amutance17900969
AT5G25890AT1G59750negativeotherN/Amutance17900969
AT5G25890AT1G77850negativeotherN/Amutance17900969
AT5G25890AT2G24765negativeotherN/Amutance17900969
AT5G25890AT2G28350negativeotherN/Amutance17900969
AT5G25890AT4G30080negativeotherN/Amutance17900969
AT5G25890AT5G20730negativeotherN/Amutance17900969
AT5G25890AT5G37020negativeotherN/Amutance17900969
AT5G25890AT5G60450negativeotherN/Amutance17900969
AT5G25890AT5G62000negativeotherN/Amutance17900969

Ortholog Groups annotation for this gene

No related Ortholog Groups information for this gene.

DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023096.3e-4425170IPR003311AUX/IAA protein
PROSITEPS5096230.88881162IPR011525Aux/IAA-ARF-dimerisation