You are querying gene by "AT5G25350".

Locus: AT5G25350 Alias: EBF2

Hormone Evidence Function category Gene Description PMID
ethyleneTransgenic Hormone signal transduction EIN3 Binding F-box protein;protein binding;ubiquitin-protein ligase activity;negative regulation of ethylene mediated signaling pathway. 15090654 14675532
Mutant Hormone signal transduction EIN3 Binding F-box protein;protein binding;ubiquitin-protein ligase activity;negative regulation of ethylene mediated signaling pathway. 15090654 14675532
GeneOntology - negative regulation of ethylene mediated signaling pathway 14675532

Basic gene information ( show / hide contents )

Locus AT5G25350 | Chromosome: 5 | Strand: -
Description EIN3 Binding F-box protein;protein binding;ubiquitin-protein ligase activity;negative regulation of ethylene mediated signaling pathway.
Alias
EBF2( alias )
Gene model
AT5G25350.1 | From: 8794255 | To: 8797023
Sequence
AT5G25350.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 14675532
cellular_component
nucleus PMID: 14675532
SCF ubiquitin ligase complex PMID: 14675533
biological_process
negative regulation of ethylene mediated signaling pathway PMID: 14675532
ubiquitin-dependent protein catabolic process PMID: 14675532
response to ethylene stimulus PMID: 14675532
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   ethylene   ]

Genotype PMID Type
ctr1-1 ebf2-3 17307926 mutant
ebf1-3 ebf2-3 15090654 mutant
ebf2-1 14675532 mutant
ebf2-1 ein2-5 14675532 mutant
ebf2-3 15090654 mutant
ein2-1 ebf1-1 ebf2-1 14675533 mutant
ein3-1 ebf1-3 ebf2-3 17307926 mutant
ein3-1 eil1-3 ebf1-3 ebf2-3 17307926 mutant
ein5-1 ebf2-1 16920797 mutant
ebf2-2 14675532 mutant
ebf2-4 15090654 mutant
EBF2ox 14675532 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G25350.1 
length: 2600 
miRNA : ath-miR172b*
length: 20 
 
mfe: -23.6 kcal/mol 
p-value: 0.018512 
 
position  606 
target 5' U  U          C      U 
           GU GGUCUUGGUG UGUUGC  
           CA UUAGAAUUAC ACGACG  
miRNA  3'    C          C        
 
 
target: AT5G25350.1 
length: 2600 
miRNA : ath-miR1888
length: 21 
 
mfe: -21.9 kcal/mol 
p-value: 0.034963 
 
position  71 
target 5' C                U   C 
           UUUUCAUGAAUCUUAG CUU  
           AGAAGUGUUUAGAAUU GAA  
miRNA  3' A                    U 
 
 
target: AT5G25350.1 
length: 2600 
miRNA : ath-miR832-3p
length: 21 
 
mfe: -28.1 kcal/mol 
p-value: 0.002967 
 
position  820 
target 5' U      C   U         G  G 
           CUUGCU UGG GUUGGGAAU AG  
           GAACGA ACC UAACCCUUA UU  
miRNA  3'                      G    
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G25350AT1G73730negativeprotein degradationN/Amutance14675532
AT5G25350AT2G27050negativeprotein degradationN/Amutance14675532
AT5G25350AT3G20770negativeprotein degradationN/Amutance14675532
AT5G25350AT5G10120negativeprotein degradationN/Amutance14675532
AT5G25350AT5G21120negativeprotein degradationN/Amutance14675532
AT5G25350AT5G65100negativeprotein degradationN/Amutance14675532

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_40969
AccessionTaxon
NP_197917 ( AT5G25350 )Arabidopsis thaliana
NP_565597Arabidopsis thaliana
NP_001046222Oryza sativa Japonica Group
e_gw1.188.74.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3520009Physcomitrella patens subsp. patens
28320.m001145Ricinus communis
29848.m004629Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF813831.3E-84992IPR022364F-box domain, Skp2-like
PfamPF006460.00130000000000000065495IPR001810F-box domain, cyclin-like
SMARTSM002563.6000003870073974E-558100IPR001810F-box domain, cyclin-like
SMARTSM003671.3000006720273154E-7192217IPR006553Leucine-rich repeat, cysteine-containing subtype