You are querying gene by "AT5G23720".

Locus: AT5G23720 Alias: PHS1

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling. 16889651
GeneOntology - response to abscisic acid stimulus 16889651

Basic gene information ( show / hide contents )

Locus AT5G23720 | Chromosome: 5 | Strand: +
Description Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.
Alias
PHS1( alias )
Gene model
AT5G23720.1 | From: 7998233 | To: 8002843
AT5G23720.2 | From: 7998284 | To: 8002808
AT5G23720.3 | From: 7998477 | To: 8002808
Sequence
AT5G23720.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G23720.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G23720.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein tyrosine/serine/threonine phosphatase activity PMID:
phosphoprotein phosphatase activity PMID: 15208393
cellular_component
intracellular PMID:
biological_process
regulation of gene expression, epigenetic PMID: 16889651
cortical microtubule organization and biogenesis PMID: 15208393
regulation of stomatal movement PMID: 16889651
response to abscisic acid stimulus PMID: 16889651
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
phs1-1 145342002 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G23720.1 
length: 3115 
miRNA : ath-miR857
length: 21 
 
mfe: -23.1 kcal/mol 
p-value: 0.071441 
 
position  2245 
target 5' U     U         U    U 
           UACAC CUUCAGCAU UAGG  
           AUGUG GAAGUUGUA GUUU  
miRNA  3' U               U    U 
 
 
target: AT5G23720.1 
length: 3115 
miRNA : ath-miR867
length: 21 
 
mfe: -24.0 kcal/mol 
p-value: 0.017081 
 
position  872 
target 5' C                   U 
           UCUUAAUGAGUUAUGUUCA  
           AGGAUUAUUUGGUACAAGU  
miRNA  3' A                   U 
 
 
target: AT5G23720.2 
length: 3024 
miRNA : ath-miR857
length: 21 
 
mfe: -23.1 kcal/mol 
p-value: 0.068892 
 
position  2189 
target 5' U     U         U    U 
           UACAC CUUCAGCAU UAGG  
           AUGUG GAAGUUGUA GUUU  
miRNA  3' U               U    U 
 
 
target: AT5G23720.2 
length: 3024 
miRNA : ath-miR867
length: 21 
 
mfe: -24.0 kcal/mol 
p-value: 0.016632 
 
position  816 
target 5' C                   U 
           UCUUAAUGAGUUAUGUUCA  
           AGGAUUAUUUGGUACAAGU  
miRNA  3' A                   U 
 
 
target: AT5G23720.3 
length: 3006 
miRNA : ath-miR857
length: 21 
 
mfe: -23.1 kcal/mol 
p-value: 0.068388 
 
position  2171 
target 5' U     U         U    U 
           UACAC CUUCAGCAU UAGG  
           AUGUG GAAGUUGUA GUUU  
miRNA  3' U               U    U 
 
 
target: AT5G23720.3 
length: 3006 
miRNA : ath-miR867
length: 21 
 
mfe: -24.0 kcal/mol 
p-value: 0.016542 
 
position  798 
target 5' C                   U 
           UCUUAAUGAGUUAUGUUCA  
           AGGAUUAUUUGGUACAAGU  
miRNA  3' A                   U 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G23720AT2G23600PositiveotherN/Amutance16889651
AT5G23720AT5G66400negativeotherN/Amutance16889651
AT5G23720DDTPPositiveotherN/Amutance16889651

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_22762
AccessionTaxon
NP_001031933Arabidopsis thaliana
NP_197761Arabidopsis thaliana
NP_851066 ( AT5G23720 )Arabidopsis thaliana
NP_001042862Oryza sativa Japonica Group
NP_001042966Oryza sativa Japonica Group
30147.m014421Ricinus communis
estExt_Genewise1.C_900080Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF561121.7e-859357IPR011009Protein kinase-like domain
PfamPF091929.8e-7921342IPR015275Actin-fragmin kinase, catalytic
SuperFamilySSF561122.5E-9548432IPR011009Protein kinase-like domain
SuperFamilySSF561122.5E-9557441IPR011009Protein kinase-like domain
PfamPF091929.300000000000104E-7696417IPR015275Actin-fragmin kinase, catalytic
PfamPF091929.49999999999983E-76105426IPR015275Actin-fragmin kinase, catalytic
SMARTSM001957.5e-23619761IPR020422Dual specificity phosphatase, subgroup, catalytic domain
PROSITEPS5005431.134619763IPR020422Dual specificity phosphatase, subgroup, catalytic domain
PfamPF007829e-24638760IPR000340Dual specificity phosphatase, catalytic domain
PROSITEPS5005612.512684740IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
SMARTSM001956.599998525263756E-23694836IPR020422Dual specificity phosphatase, subgroup, catalytic domain
PROSITEPS500540.0694838IPR020422Dual specificity phosphatase, subgroup, catalytic domain
SMARTSM001956.599998525263756E-23703845IPR020422Dual specificity phosphatase, subgroup, catalytic domain
PROSITEPS500540.0703847IPR020422Dual specificity phosphatase, subgroup, catalytic domain
PROSITEPS00383NA706716IPR016130Protein-tyrosine phosphatase, active site
PfamPF007828.100000000000004E-21713835IPR000340Dual specificity phosphatase, catalytic domain
PfamPF007828.199999999999968E-21722844IPR000340Dual specificity phosphatase, catalytic domain
PROSITEPS500560.0759815IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
PROSITEPS500560.0768824IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
PROSITEPS003830.0781791IPR016130Protein-tyrosine phosphatase, active site
PROSITEPS003830.0790800IPR016130Protein-tyrosine phosphatase, active site
SMARTSM0035519.000001632484715853877IPR015880Zinc finger, C2H2-like
SMARTSM0035519.000001632484715862886IPR015880Zinc finger, C2H2-like