You are querying gene by "AT5G22260".

Locus: AT5G22260 Alias: MS1

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT5G22260 | Chromosome: 5 | Strand: -
Description Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors.
Alias
MS1( alias )
Gene model
AT5G22260.1 | From: 7367638 | To: 7370298
Sequence
AT5G22260.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID:
cellular_component
nucleus PMID: 12461128
biological_process
pollen germination PMID: 12461128
regulation of transcription, DNA-dependent PMID:
tapetal layer morphogenesis PMID: 18032630
pollen wall formation PMID: 18032630
microgametogenesis PMID: 18032630
microsporogenesis PMID: 18032629
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G22260.1 
length: 2194 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.1 kcal/mol 
p-value: 0.065607 
 
position  1841 
target 5' U    U G               G 
           UGAA G GAAUAAGGGAUUGGU  
           ACUU U CUUGUUCUUUGACUA  
miRNA  3'        G                 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_30140
AccessionTaxon
estExt_fgenesh1_pg.C_Chr_05.00010256Ostreococcus tauri
NP_176791Arabidopsis thaliana
NP_001051078Oryza sativa Japonica Group
e_gw1.271.8.1Physcomitrella patens subsp. patens
e_gw1.314.9.1Physcomitrella patens subsp. patens
27637.m000176Ricinus communis
NP_197618 ( AT5G22260 )Arabidopsis thaliana
NP_001063319Oryza sativa Japonica Group
29780.m001396Ricinus communis
NP_001067563Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF579038.9E-11608669IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002498.20000406808458E-6616662IPR001965Zinc finger, PHD-type
PfamPF006284.599999999999999E-4617663IPR019787Zinc finger, PHD-finger
PROSITEPS013590.0617661IPR019786Zinc finger, PHD-type, conserved site