You are querying gene by "AT5G22260".

Locus: AT5G22260 Alias: MS1

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT5G22260 | Chromosome: 5 | Strand: -
Description Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors.
MS1( alias )
Gene model
AT5G22260.1 | From: 7367638 | To: 7370298
AT5G22260.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
DNA binding PMID:
transcription factor activity PMID:
nucleus PMID: 12461128
pollen germination PMID: 12461128
regulation of transcription, DNA-dependent PMID:
tapetal layer morphogenesis PMID: 18032630
pollen wall formation PMID: 18032630
microgametogenesis PMID: 18032630
microsporogenesis PMID: 18032629
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT5G22260.1 
length: 2194 
miRNA : ath-miR837-5p
length: 21 
mfe: -23.1 kcal/mol 
p-value: 0.065607 
position  1841 
target 5' U    U G               G 
miRNA  3'        G                 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_30140
estExt_fgenesh1_pg.C_Chr_05.00010256Ostreococcus tauri
NP_176791Arabidopsis thaliana
NP_001051078Oryza sativa Japonica Group
e_gw1.271.8.1Physcomitrella patens subsp. patens
e_gw1.314.9.1Physcomitrella patens subsp. patens
27637.m000176Ricinus communis
NP_197618 ( AT5G22260 )Arabidopsis thaliana
NP_001063319Oryza sativa Japonica Group
29780.m001396Ricinus communis
NP_001067563Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF579038.9E-11608669IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002498.20000406808458E-6616662IPR001965Zinc finger, PHD-type
PfamPF006284.599999999999999E-4617663IPR019787Zinc finger, PHD-finger
PROSITEPS013590.0617661IPR019786Zinc finger, PHD-type, conserved site