You are querying gene by "AT5G22220".

Locus: AT5G22220 Alias: ATE2FB

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 16055635

Basic gene information ( show / hide contents )

Locus AT5G22220 | Chromosome: 5 | Strand: +
Description response to auxin stimulus
Alias
ATE2FB( alias )
E2F1( alias )
E2FB( alias )
Gene model
AT5G22220.2 | From: 7360538 | To: 7364457
AT5G22220.3 | From: 7360538 | To: 7364339
Sequence
AT5G22220.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G22220.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 11786543
protein binding PMID: 16055635
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 16514015
transcription factor complex PMID:
cytoplasm PMID: 16514015
biological_process
response to auxin stimulus PMID: 16055635
regulation of cell division PMID: 16055635
regulation of transcription, DNA-dependent PMID:
trichome morphogenesis PMID: 16514015
positive regulation of meiotic cell cycle PMID: 16055635
KEGG pathway This gene participates in 2 pathways:
Pathway Enzyme
TGF-beta signaling pathway E2F transcription factor 4/5, p107/p130-binding
Cell cycle - mammals E2F transcription factor 4/5, p107/p130-binding
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G22220.2 
length: 1958 
miRNA : ath-miR869.2
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.030673 
 
position  797 
target 5' C             A      A 
           UCGA UGUCUCAA ACCAGG  
           AGUU AUAGAGUU UGGUCU  
miRNA  3' C    G        G        
 
 
target: AT5G22220.3 
length: 1831 
miRNA : ath-miR869.2
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.028125 
 
position  797 
target 5' C             A      A 
           UCGA UGUCUCAA ACCAGG  
           AGUU AUAGAGUU UGGUCU  
miRNA  3' C    G        G        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11598
AccessionTaxon
195786Chlamydomonas reinhardtii
NP_001047049Oryza sativa Japonica Group
NP_001052763Oryza sativa Japonica Group
NP_001066206Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_02.00010270Ostreococcus tauri
e_gw1.364.12.1Physcomitrella patens subsp. patens
e_gw1.38.2.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_970008Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_220046Physcomitrella patens subsp. patens
28324.m000396Ricinus communis
NP_565831Arabidopsis thaliana
NP_973611Arabidopsis thaliana
30055.m001619Ricinus communis
NP_001031921Arabidopsis thaliana
NP_568413 ( AT5G22220 )Arabidopsis thaliana
NP_973610Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.10.104.7e-26123197IPR011991Winged helix-turn-helix transcription repressor DNA-binding
Gene3DG3DSA:1.10.10.105.000009099153147E-26123197IPR011991Winged helix-turn-helix transcription repressor DNA-binding
PfamPF023193e-23129194IPR003316Transcription factor E2F/dimerisation partner (TDP)
PfamPF023192.4E-20129194IPR003316Transcription factor E2F/dimerisation partner (TDP)
PANTHERPTHR120817.7e-210130405IPR015633E2F Family
PANTHERPTHR120810.0130405IPR015633E2F Family