You are querying gene by "AT5G22220".

Locus: AT5G22220 Alias: ATE2FB

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 16055635

Basic gene information ( show / hide contents )

Locus AT5G22220 | Chromosome: 5 | Strand: +
Description response to auxin stimulus
ATE2FB( alias )
E2F1( alias )
E2FB( alias )
Gene model
AT5G22220.2 | From: 7360538 | To: 7364457
AT5G22220.3 | From: 7360538 | To: 7364339
AT5G22220.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G22220.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
DNA binding PMID: 11786543
protein binding PMID: 16055635
transcription factor activity PMID: 11118137
nucleus PMID: 16514015
transcription factor complex PMID:
cytoplasm PMID: 16514015
response to auxin stimulus PMID: 16055635
regulation of cell division PMID: 16055635
regulation of transcription, DNA-dependent PMID:
trichome morphogenesis PMID: 16514015
positive regulation of meiotic cell cycle PMID: 16055635
KEGG pathway This gene participates in 2 pathways:
Pathway Enzyme
TGF-beta signaling pathway E2F transcription factor 4/5, p107/p130-binding
Cell cycle - mammals E2F transcription factor 4/5, p107/p130-binding
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT5G22220.2 
length: 1958 
miRNA : ath-miR869.2
length: 21 
mfe: -25.6 kcal/mol 
p-value: 0.030673 
position  797 
target 5' C             A      A 
miRNA  3' C    G        G        
target: AT5G22220.3 
length: 1831 
miRNA : ath-miR869.2
length: 21 
mfe: -25.6 kcal/mol 
p-value: 0.028125 
position  797 
target 5' C             A      A 
miRNA  3' C    G        G        

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11598
195786Chlamydomonas reinhardtii
NP_001047049Oryza sativa Japonica Group
NP_001052763Oryza sativa Japonica Group
NP_001066206Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_02.00010270Ostreococcus tauri
e_gw1.364.12.1Physcomitrella patens subsp. patens
e_gw1.38.2.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_970008Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_220046Physcomitrella patens subsp. patens
28324.m000396Ricinus communis
NP_565831Arabidopsis thaliana
NP_973611Arabidopsis thaliana
30055.m001619Ricinus communis
NP_001031921Arabidopsis thaliana
NP_568413 ( AT5G22220 )Arabidopsis thaliana
NP_973610Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA: helix-turn-helix transcription repressor DNA-binding
Gene3DG3DSA: helix-turn-helix transcription repressor DNA-binding
PfamPF023193e-23129194IPR003316Transcription factor E2F/dimerisation partner (TDP)
PfamPF023192.4E-20129194IPR003316Transcription factor E2F/dimerisation partner (TDP)
PANTHERPTHR120817.7e-210130405IPR015633E2F Family
PANTHERPTHR120810.0130405IPR015633E2F Family