You are querying gene by "AT5G20960".

Locus: AT5G20960 Alias: AAO1

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - auxin biosynthetic process 9489015

Basic gene information ( show / hide contents )

Locus AT5G20960 | Chromosome: 5 | Strand: +
Description auxin biosynthetic process
Alias
AAO1( alias )
AO1( alias )
ATAO( alias )
ATAO1( alias )
Gene model
AT5G20960.1 | From: 7116740 | To: 7122672
AT5G20960.2 | From: 7116740 | To: 7122776
Sequence
AT5G20960.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G20960.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
aldehyde oxidase activity PMID: 10739959
indole-3-acetaldehyde oxidase activity PMID: 10739959
biological_process
auxin biosynthetic process PMID: 9489015
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G20960.1 
length: 4484 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -29.8 kcal/mol 
p-value: 0.004782 
 
position  617 
target 5' U   A              C    A 
           UGC GCGGAUGUGGAUAU GAAG  
           ACG CGUUUACGCCUAUA UUUC  
miRNA  3'                           
 
 
target: AT5G20960.1 
length: 4484 
miRNA : ath-miR783
length: 21 
 
mfe: -25.1 kcal/mol 
p-value: 0.061555 
 
position  3616 
target 5' G       C             G 
           GAAU UG AGCGAGCGAGGUU  
           CUUG AC UUGCUCGUUUCGA  
miRNA  3'      U                A 
 
 
target: AT5G20960.1 
length: 4484 
miRNA : ath-miR831
length: 22 
 
mfe: -25.9 kcal/mol 
p-value: 0.040976 
 
position  915 
target 5' A      A              U 
           GAGAGG AGUACGAA AGAUU  
           UUCUUC UCAUGCUU UCUAG  
miRNA  3' G               C     U 
 
 
target: AT5G20960.1 
length: 4484 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.6 kcal/mol 
p-value: 0.098186 
 
position  4018 
target 5' A U   A              A 
           G AAU AACAAGGGACUGAU  
           C UUG UUGUUCUUUGACUA  
miRNA  3' A U   C                
 
 
target: AT5G20960.1 
length: 4484 
miRNA : ath-miR844*
length: 21 
 
mfe: -23.4 kcal/mol 
p-value: 0.063184 
 
position  2418 
target 5' C        U            C 
           AACU GUA GGUGGUUUAUAG  
           UUGA CAU CUACCGAAUAUU  
miRNA  3'      U   U              
 
 
target: AT5G20960.1 
length: 4484 
miRNA : ath-miR857
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.078171 
 
position  2581 
target 5' U        G      C     U 
           GUGCACUU CAGCAU CAAAA  
           UAUGUGGA GUUGUA GUUUU  
miRNA  3'          A      U       
 
 
target: AT5G20960.2 
length: 4426 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -29.8 kcal/mol 
p-value: 0.004711 
 
position  617 
target 5' U   A              C    A 
           UGC GCGGAUGUGGAUAU GAAG  
           ACG CGUUUACGCCUAUA UUUC  
miRNA  3'                           
 
 
target: AT5G20960.2 
length: 4426 
miRNA : ath-miR783
length: 21 
 
mfe: -25.1 kcal/mol 
p-value: 0.060879 
 
position  3616 
target 5' G       C             G 
           GAAU UG AGCGAGCGAGGUU  
           CUUG AC UUGCUCGUUUCGA  
miRNA  3'      U                A 
 
 
target: AT5G20960.2 
length: 4426 
miRNA : ath-miR831
length: 22 
 
mfe: -25.9 kcal/mol 
p-value: 0.040468 
 
position  915 
target 5' A      A              U 
           GAGAGG AGUACGAA AGAUU  
           UUCUUC UCAUGCUU UCUAG  
miRNA  3' G               C     U 
 
 
target: AT5G20960.2 
length: 4426 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.6 kcal/mol 
p-value: 0.097176 
 
position  4018 
target 5' A U   A              A 
           G AAU AACAAGGGACUGAU  
           C UUG UUGUUCUUUGACUA  
miRNA  3' A U   C                
 
 
target: AT5G20960.2 
length: 4426 
miRNA : ath-miR844*
length: 21 
 
mfe: -23.4 kcal/mol 
p-value: 0.062227 
 
position  2418 
target 5' C        U            C 
           AACU GUA GGUGGUUUAUAG  
           UUGA CAU CUACCGAAUAUU  
miRNA  3'      U   U              
 
 
target: AT5G20960.2 
length: 4426 
miRNA : ath-miR857
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.076988 
 
position  2581 
target 5' U        G      C     U 
           GUGCACUU CAGCAU CAAAA  
           UAUGUGGA GUUGUA GUUUU  
miRNA  3'          A      U       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10289
AccessionTaxon
NP_195215Arabidopsis thaliana
NP_195216Arabidopsis thaliana
117669Chlamydomonas reinhardtii
NP_001050420Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_3360042Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_440069Physcomitrella patens subsp. patens
30169.m006431Ricinus communis
NP_001077966Arabidopsis thaliana
NP_180283Arabidopsis thaliana
NP_189946Arabidopsis thaliana
NP_563711Arabidopsis thaliana
NP_568407 ( AT5G20960 )Arabidopsis thaliana
NP_851049Arabidopsis thaliana
NP_001051517Oryza sativa Japonica Group
NP_001051518Oryza sativa Japonica Group
NP_001058964Oryza sativa Japonica Group
NP_001059379Oryza sativa Japonica Group
NP_001064133Oryza sativa Japonica Group
e_gw1.170.7.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_930001Physcomitrella patens subsp. patens
29854.m001093Ricinus communis
29854.m001095Ricinus communis
29854.m001100Ricinus communis
29976.m000486Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0001270.0131368IPR016208Aldehyde oxidase/xanthine dehydrogenase
Gene3DG3DSA:3.10.20.305.1000100235826005E-2716104IPR012675Beta-grasp fold, ferredoxin-type
SuperFamilySSF542925.2E-2418109IPR001041Ferredoxin
PROSITEPS510850.019108IPR001041Ferredoxin
PfamPF001110.00142593IPR001041Ferredoxin
PROSITEPS001970.06068IPR0060582Fe-2S ferredoxin, iron-sulphur binding site
SuperFamilySSF477411.2E-32104232IPR002888[2Fe-2S]-binding
PfamPF017993.900000000000007E-15106189IPR002888[2Fe-2S]-binding
SuperFamilySSF561764.0E-42224427IPR016166FAD-binding, type 2
PROSITEPS513870.0246427IPR016166FAD-binding, type 2
PfamPF009415.199999999999962E-41250425IPR002346Molybdopterin dehydrogenase, FAD-binding
Gene3DG3DSA:3.30.465.103.0999994589937598E-18306423IPR016169CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2
Gene3DG3DSA:3.30.390.506.299995628594992E-9436553IPR005107CO dehydrogenase flavoprotein, C-terminal
SuperFamilySSF554479.6E-18438556IPR005107CO dehydrogenase flavoprotein, C-terminal
PfamPF034501.7999999999999997E-18443546IPR005107CO dehydrogenase flavoprotein, C-terminal
Gene3DG3DSA:3.90.1170.509.199984144203112E-29577721IPR000674Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
SuperFamilySSF546656.4E-39586726IPR000674Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
PfamPF013153.600000000000006E-32611720IPR000674Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
SuperFamilySSF560030.07241356IPR008274Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding
PfamPF027380.07321271IPR008274Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding
Gene3DG3DSA:3.30.365.101.7999975402237756E-28776870IPR008274Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding
Gene3DG3DSA:3.30.365.101.7000029559006477E-509471316IPR008274Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding