You are querying gene by "AT5G20730".

Locus: AT5G20730 Alias: ARF7

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - response to ethylene stimulus 16461383
auxinMutant Hormone signal transduction transcription factor 15659631
GeneOntology - response to auxin stimulus 17259263

Basic gene information ( show / hide contents )

Locus AT5G20730 | Chromosome: 5 | Strand: -
Description transcription factor
Alias
ARF7( alias )
BIP( alias )
IAA21( alias )
IAA23( alias )
IAA25( alias )
MSG1( alias )
NPH4( alias )
TIR5( alias )
Gene model
AT5G20730.1 | From: 7016472 | To: 7022115
AT5G20730.2 | From: 7016447 | To: 7022044
AT5G20730.3 | From: 7016447 | To: 7022115
Sequence
AT5G20730.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G20730.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G20730.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 17259263
transcription regulator activity PMID: 10810148
transcription factor activity PMID: 11118137
transcription activator activity PMID: 15923351
cellular_component
nucleus PMID: 17259263
biological_process
response to auxin stimulus PMID: 17259263
lateral root primordium development PMID: 17259263
regulation of growth PMID: 10810148
regulation of transcription, DNA-dependent PMID: 10318972
lateral root development PMID: 15960621
response to ethylene stimulus PMID: 16461383
blue light signaling pathway PMID: 10364413
gravitropism PMID: 15923351
phototropism PMID: 10364413
leaf development PMID: 15960621
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
arf7/nph4/msg1 15659631 mutant
nph4arf19 15659631 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G20730.1 
length: 4341 
miRNA : ath-miR447a
length: 22 
 
mfe: -27.4 kcal/mol 
p-value: 0.033217 
 
position  3405 
target 5' A         U     G      C 
           CAACAAAAU UCUUG CUCCAA  
           GUUGUUUUG AGAGC GGGGUU  
miRNA  3'           U     A        
 
 
target: AT5G20730.1 
length: 4341 
miRNA : ath-miR447b
length: 22 
 
mfe: -27.4 kcal/mol 
p-value: 0.033523 
 
position  3405 
target 5' A         U     G      C 
           CAACAAAAU UCUUG CUCCAA  
           GUUGUUUUG AGAGC GGGGUU  
miRNA  3'           U     A        
 
 
target: AT5G20730.2 
length: 4292 
miRNA : ath-miR447a
length: 22 
 
mfe: -27.4 kcal/mol 
p-value: 0.032930 
 
position  3331 
target 5' A         U     G      C 
           CAACAAAAU UCUUG CUCCAA  
           GUUGUUUUG AGAGC GGGGUU  
miRNA  3'           U     A        
 
 
target: AT5G20730.2 
length: 4292 
miRNA : ath-miR447b
length: 22 
 
mfe: -27.4 kcal/mol 
p-value: 0.033112 
 
position  3331 
target 5' A         U     G      C 
           CAACAAAAU UCUUG CUCCAA  
           GUUGUUUUG AGAGC GGGGUU  
miRNA  3'           U     A        
 
 
target: AT5G20730.3 
length: 4321 
miRNA : ath-miR447a
length: 22 
 
mfe: -27.4 kcal/mol 
p-value: 0.033100 
 
position  3405 
target 5' A         U     G      C 
           CAACAAAAU UCUUG CUCCAA  
           GUUGUUUUG AGAGC GGGGUU  
miRNA  3'           U     A        
 
 
target: AT5G20730.3 
length: 4321 
miRNA : ath-miR447b
length: 22 
 
mfe: -27.4 kcal/mol 
p-value: 0.033355 
 
position  3405 
target 5' A         U     G      C 
           CAACAAAAU UCUUG CUCCAA  
           GUUGUUUUG AGAGC GGGGUU  
miRNA  3'           U     A        
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT5G20730AT1G74740PositivetransciptN/Amolecular18599455
AT5G20730AT2G14610negativetransciptN/Abiochem17276977
AT5G20730AT3G15510PositivetransciptN/Amolecular17672844
AT5G20730AT3G50060nondirectionprotein interactionN/Atransgenic17675404
AT5G20730AT4G30610PositivetransciptN/AGO/othersN/A
AT5G20730AT4G37390PositivetransciptN/Amutance14756757
AT5G20730AT5G18560PositivetransciptN/Amutance17630277
AT5G20730CBF/DREBnegativetransciptN/Abiochem17276977

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_26771
AccessionTaxon
NP_173356Arabidopsis thaliana
NP_568400Arabidopsis thaliana
NP_851046 ( AT5G20730 )Arabidopsis thaliana
NP_851047Arabidopsis thaliana
NP_001045857Oryza sativa Japonica Group
NP_001057054Oryza sativa Japonica Group
NP_001058492Oryza sativa Japonica Group
NP_001062268Oryza sativa Japonica Group
29739.m003713Ricinus communis
30185.m000956Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023629.800000000000003E-18127228IPR003340Transcriptional factor B3
PROSITEPS508630.0127229IPR003340Transcriptional factor B3
PfamPF023621.2e-20127228IPR003340Transcriptional factor B3
PROSITEPS5086312.125127229IPR003340Transcriptional factor B3
PfamPF023621.2e-20127228IPR003340Transcriptional factor B3
PROSITEPS5086312.125127229IPR003340Transcriptional factor B3
PfamPF065071.6000000000000007E-31253336IPR010525Auxin response factor
PfamPF065074.9e-36253335IPR010525Auxin response factor
PfamPF065072e-34253336IPR010525Auxin response factor
PfamPF023091.1e-249921126IPR003311AUX/IAA protein
PfamPF023098.599999999999986E-229931127IPR003311AUX/IAA protein
PfamPF023091.1e-249931127IPR003311AUX/IAA protein
PROSITEPS5096228.97310381120IPR011525Aux/IAA-ARF-dimerisation
PROSITEPS509620.010391121IPR011525Aux/IAA-ARF-dimerisation
PROSITEPS5096228.97310391121IPR011525Aux/IAA-ARF-dimerisation