You are querying gene by "AT5G20040".

Locus: AT5G20040 Alias: ATIPT9

Hormone Evidence Function category Gene Description PMID
cytokininGeneOntology - cytokinin biosynthetic process 17062755

Basic gene information ( show / hide contents )

Locus AT5G20040 | Chromosome: 5 | Strand: -
Description cytokinin biosynthetic process
Alias
ATIPT9( alias )
Gene model
AT5G20040.1 | From: 6767799 | To: 6771172
AT5G20040.2 | From: 6767941 | To: 6771172
Sequence
AT5G20040.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT5G20040.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
ATP binding PMID:
tRNA isopentenyltransferase activity PMID:
biological_process
cytokinin biosynthetic process PMID: 17062755
tRNA processing PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G20040.1 
length: 1724 
miRNA : ath-miR157d
length: 20 
 
mfe: -26.3 kcal/mol 
p-value: 0.004052 
 
position  51 
target 5' U     A            U 
           UGCUC CUGUCUUC GUC  
           ACGAG GAUAGAAG CAG  
miRNA  3' C     A        A   U 
 
 
target: AT5G20040.1 
length: 1724 
miRNA : ath-miR846
length: 21 
 
mfe: -21.2 kcal/mol 
p-value: 0.043824 
 
position  1342 
target 5' G                 G  U 
           GAUUCAA UACUUCAAU CA  
           UUAAGUU GUGAAGUUA GU  
miRNA  3'         C         A  U 
 
 
target: AT5G20040.2 
length: 1570 
miRNA : ath-miR157d
length: 20 
 
mfe: -26.3 kcal/mol 
p-value: 0.003580 
 
position  51 
target 5' U     A            U 
           UGCUC CUGUCUUC GUC  
           ACGAG GAUAGAAG CAG  
miRNA  3' C     A        A   U 
 
 
target: AT5G20040.2 
length: 1570 
miRNA : ath-miR846
length: 21 
 
mfe: -21.2 kcal/mol 
p-value: 0.040041 
 
position  1342 
target 5' G                 G  U 
           GAUUCAA UACUUCAAU CA  
           UUAAGUU GUGAAGUUA GU  
miRNA  3'         C         A  U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10507
AccessionTaxon
NP_565658Arabidopsis thaliana
NP_001045520Oryza sativa Japonica Group
0300010307Ostreococcus tauri
29791.m000555Ricinus communis
NP_568390Arabidopsis thaliana
NP_851043 ( AT5G20040 )Arabidopsis thaliana
180720Chlamydomonas reinhardtii
NP_001058651Oryza sativa Japonica Group
0600010482Ostreococcus tauri
estExt_fgenesh1_pg.C_3410001Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_960062Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_14000223Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_280000003Physcomitrella patens subsp. patens
30150.m000473Ricinus communis
fgenesh1_pg.scaffold_64000074Physcomitrella patens subsp. patens
30491.m000016Ricinus communis
34128.m000014Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF064140.0374380IPR010488Zeta toxin
HAMAPMF_0018530.77449396IPR018022tRNA delta(2)-isopentenylpyrophosphate transferase
TIGRFAMTIGR001746.39998633403535E-5952383IPR018022tRNA delta(2)-isopentenylpyrophosphate transferase
TIGRFAMTIGR001741.1e-6252383IPR018022tRNA delta(2)-isopentenylpyrophosphate transferase
PANTHERPTHR110881.6999880237079647E-12683448IPR002627tRNA isopentenyltransferase
PANTHERPTHR110881.3e-13083452IPR002627tRNA isopentenyltransferase
PfamPF017155.699999999999982E-4884379IPR002627tRNA isopentenyltransferase
PfamPF017157.4e-5184379IPR002627tRNA isopentenyltransferase