You are querying gene by "AT5G19880".

Locus: AT5G19880 Alias: AT5G19880

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - response to ethylene stimulus

Basic gene information ( show / hide contents )

Locus AT5G19880 | Chromosome: 5 | Strand: -
Description response to ethylene stimulus
Alias
AT5G19880( alias )
Gene model
AT5G19880.1 | From: 6720386 | To: 6722477
Sequence
AT5G19880.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
peroxidase activity PMID:
cellular_component
endomembrane system PMID:
biological_process
N-terminal protein myristoylation PMID: 12912986
response to virus PMID:
response to ethylene stimulus PMID:
KEGG pathway This gene participates in 3 pathways:
Pathway Enzyme
Methane metabolism peroxidase
Phenylalanine metabolism peroxidase
Stilbene, coumarine and lignin biosynthesis peroxidase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G19880.1 
length: 1248 
miRNA : ath-miR391
length: 21 
 
mfe: -28.4 kcal/mol 
p-value: 0.013572 
 
position  415 
target 5' C  A          G   U  U 
           GG GUUGUCUCUU UGC GA  
           CC CGAUAGAGAG ACG CU  
miRNA  3' A  G          G      U 
 
 
target: AT5G19880.1 
length: 1248 
miRNA : ath-miR860
length: 21 
 
mfe: -24.5 kcal/mol 
p-value: 0.006283 
 
position  276 
target 5' G    G          A       A 
           GUGC AUGGUUCGGU CUAUUGG  
           UAUG UAUCAGGUUA GAUAACU  
miRNA  3'                           
 
 
target: AT5G19880.1 
length: 1248 
miRNA : ath-miR862-3p
length: 21 
 
mfe: -26.3 kcal/mol 
p-value: 0.007951 
 
position  648 
target 5' C       A            G 
           CUUCGGG GGGUUCAGUGUG  
           GAAGUUC UCUAGGUCGUAU  
miRNA  3'         A            A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

No related Ortholog Groups information for this gene.

DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS5087376.71924329IPR002016Haem peroxidase, plant/fungal/bacterial
SuperFamilySSF481136.5e-10624329IPR010255Haem peroxidase
PRINTSPR004619.7e-653453IPR000823Plant peroxidase
PfamPF001416.5e-6645292IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004581.3e-325670IPR002016Haem peroxidase, plant/fungal/bacterial
PROSITEPS00436NA5667IPR019794Peroxidase, active site
PRINTSPR004619.7e-655878IPR000823Plant peroxidase
PRINTSPR004619.7e-65100113IPR000823Plant peroxidase
PRINTSPR004619.7e-65119129IPR000823Plant peroxidase
PRINTSPR004581.3e-32120137IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004581.3e-32138150IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004619.7e-65138153IPR000823Plant peroxidase
PRINTSPR004619.7e-65185197IPR000823Plant peroxidase
PRINTSPR004581.3e-32186201IPR002016Haem peroxidase, plant/fungal/bacterial
PROSITEPS00435NA186196IPR019793Peroxidases heam-ligand binding site
PRINTSPR004619.7e-65245260IPR000823Plant peroxidase
PRINTSPR004581.3e-32247262IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004619.7e-65261278IPR000823Plant peroxidase
PRINTSPR004619.7e-65303316IPR000823Plant peroxidase