You are querying gene by "AT5G19770".

Locus: AT5G19770 Alias: TUA3

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT5G19770 | Chromosome: 5 | Strand: -
Description tubulin 3
Alias
TUA3( alias )
Gene model
AT5G19770.1 | From: 6682495 | To: 6684581
Sequence
AT5G19770.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
structural constituent of cytoskeleton PMID: 1498608
cellular_component
tubulin complex PMID: 1498608
biological_process
protein polymerization PMID:
microtubule-based movement PMID:
microtubule-based process PMID:
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Gap junction tubulin, alpha
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G19770.1 
length: 1726 
miRNA : ath-miR781
length: 21 
 
mfe: -22.5 kcal/mol 
p-value: 0.091601 
 
position  1211 
target 5' C                 G  U 
           UAAG GUUCAGAGAGCU UA  
           AUUC UAGGUCUUUUGA AU  
miRNA  3'      A            G  U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10075
AccessionTaxon
NP_171974Arabidopsis thaliana
NP_175423Arabidopsis thaliana
NP_176654Arabidopsis thaliana
NP_193232Arabidopsis thaliana
NP_197478Arabidopsis thaliana
NP_197479 ( AT5G19770 )Arabidopsis thaliana
NP_849388Arabidopsis thaliana
128523Chlamydomonas reinhardtii
186023Chlamydomonas reinhardtii
NP_001049400Oryza sativa Japonica Group
NP_001051132Oryza sativa Japonica Group
NP_001060075Oryza sativa Japonica Group
NP_001067613Oryza sativa Japonica Group
estExt_fgenesh1_pm.C_Chr_12.00010025Ostreococcus tauri
fgenesh1_pm.C_Chr_08.0001000046Ostreococcus tauri
e_gw1.11.3.1Physcomitrella patens subsp. patens
e_gw1.131.6.1Physcomitrella patens subsp. patens
e_gw1.215.113.1Physcomitrella patens subsp. patens
e_gw1.48.5.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_3410014Physcomitrella patens subsp. patens
estExt_Genewise1.C_3410020Physcomitrella patens subsp. patens
estExt_Genewise1.C_700139Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_2150009Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_335000037Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_5000108Physcomitrella patens subsp. patens
29822.m003495Ricinus communis
29950.m001120Ricinus communis
30084.m000186Ricinus communis
30099.m001691Ricinus communis
30170.m013630Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.40.50.14405.1000324220248435E-1201267IPR003008Tubulin/FtsZ, GTPase domain
PROSITEPS002280.014IPR013838Beta tubulin, autoregulation binding site
SuperFamilySSF524907.8E-1041245IPR019746Tubulin/FtsZ, N-terminal
PfamPF000916.100000000000042E-673225IPR003008Tubulin/FtsZ, GTPase domain
PRINTSPR011611.1999906342192357E-911030IPR000217Tubulin
PRINTSPR011621.0999918447140528E-1171833IPR002452Alpha tubulin
PRINTSPR011621.0999918447140528E-1174558IPR002452Alpha tubulin
PRINTSPR011611.1999906342192357E-915372IPR000217Tubulin
PRINTSPR011621.0999918447140528E-11788101IPR002452Alpha tubulin
PRINTSPR011611.1999906342192357E-9195106IPR000217Tubulin
PRINTSPR011611.1999906342192357E-91108132IPR000217Tubulin
PRINTSPR011621.0999918447140528E-117120128IPR002452Alpha tubulin
PANTHERPTHR115880.0130450IPR000217Tubulin
PANTHERPTHR11588:SF100.0130450IPR002452Alpha tubulin
PRINTSPR011611.1999906342192357E-91134152IPR000217Tubulin
PROSITEPS002270.0142148IPR017975Tubulin, conserved site
PRINTSPR011621.0999918447140528E-117148160IPR002452Alpha tubulin
PRINTSPR011611.1999906342192357E-91153174IPR000217Tubulin
PRINTSPR011621.0999918447140528E-117161172IPR002452Alpha tubulin
PRINTSPR011611.1999906342192357E-91178191IPR000217Tubulin
PRINTSPR011611.1999906342192357E-91192212IPR000217Tubulin
PRINTSPR011621.0999918447140528E-117214226IPR002452Alpha tubulin
SuperFamilySSF553072.3E-83246435IPR008280Tubulin/FtsZ, C-terminal
SMARTSM008652.39999798157265E-53248393IPR018316Tubulin/FtsZ, 2-layer sandwich domain
PfamPF039537.399999999999997E-48263393IPR018316Tubulin/FtsZ, 2-layer sandwich domain
Gene3DG3DSA:3.30.1330.201.4000050690730922E-48269383IPR018316Tubulin/FtsZ, 2-layer sandwich domain
PRINTSPR011621.0999918447140528E-117274289IPR002452Alpha tubulin
PRINTSPR011621.0999918447140528E-117321342IPR002452Alpha tubulin
PRINTSPR011621.0999918447140528E-117347360IPR002452Alpha tubulin
PRINTSPR011621.0999918447140528E-117360379IPR002452Alpha tubulin
PRINTSPR011611.1999906342192357E-91380408IPR000217Tubulin
PRINTSPR011621.0999918447140528E-117385401IPR002452Alpha tubulin
PRINTSPR011621.0999918447140528E-117422438IPR002452Alpha tubulin