You are querying gene by "AT5G19000".

Locus: AT5G19000 Alias: ATBPM1

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT5G19000 | Chromosome: 5 | Strand: +
Description BTB-POZ and MATH domain 1 (ATBPM1); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot, male gametophyte, flower, root, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BPM2 (BTB-POZ AND MATH DOMAIN 2); protein binding (TAIR:AT3G06190.1); Has 4702 Blast hits to 4630 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 3617; Fungi - 41; Plants - 884; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Alias
ATBPM1( alias )
Gene model
AT5G19000.1 | From: 6342269 | To: 6344796
Sequence
AT5G19000.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID:
biological_process
biological_process_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G19000.1 
length: 1673 
miRNA : ath-miR396a
length: 21 
 
mfe: -25.1 kcal/mol 
p-value: 0.026723 
 
position  693 
target 5' A   A   U      A       A 
           AGU UCG GGAAGC UGUGGGG  
           UCA AGU CUUUCG ACACCUU  
miRNA  3' G       U                
 
 
target: AT5G19000.1 
length: 1673 
miRNA : ath-miR396b
length: 21 
 
mfe: -25.3 kcal/mol 
p-value: 0.020482 
 
position  692 
target 5' C    A   U      A       A 
           AAGU UCG GGAAGC UGUGGGG  
           UUCA AGU CUUUCG ACACCUU  
miRNA  3'          U                
 
 
target: AT5G19000.1 
length: 1673 
miRNA : ath-miR776
length: 21 
 
mfe: -24.1 kcal/mol 
p-value: 0.014978 
 
position  1025 
target 5' C   A           A    A 
           AUA CGAUAGAAGAC UGGA  
           UGU GUUAUCUUCUG AUCU  
miRNA  3' U   A           A      
 
 
target: AT5G19000.1 
length: 1673 
miRNA : ath-miR862-3p
length: 21 
 
mfe: -25.8 kcal/mol 
p-value: 0.014978 
 
position  728 
target 5' U                C  G 
           UUCAGG AGGUCCAGU UA  
           AAGUUC UCUAGGUCG AU  
miRNA  3' G      A         U  A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11872
AccessionTaxon
NP_001031516Arabidopsis thaliana
NP_030522Arabidopsis thaliana
NP_001061285Oryza sativa Japonica Group
NP_001061287Oryza sativa Japonica Group
NP_001061288Oryza sativa Japonica Group
NP_001061289Oryza sativa Japonica Group
gw1.14.00.143.1Ostreococcus tauri
e_gw1.205.34.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_1480036Physcomitrella patens subsp. patens
estExt_Genewise1.C_3490001Physcomitrella patens subsp. patens
30143.m001182Ricinus communis
29703.m001550Ricinus communis
29726.m003917Ricinus communis
NP_001058677Oryza sativa Japonica Group
NP_197401 ( AT5G19000 )Arabidopsis thaliana
NP_566275Arabidopsis thaliana
NP_001060495Oryza sativa Japonica Group
NP_001064635Oryza sativa Japonica Group
NP_001064636Oryza sativa Japonica Group
NP_001064637Oryza sativa Japonica Group
NP_001064638Oryza sativa Japonica Group
NP_001064643Oryza sativa Japonica Group
NP_001064644Oryza sativa Japonica Group
NP_001064646Oryza sativa Japonica Group
NP_001064648Oryza sativa Japonica Group
NP_001064649Oryza sativa Japonica Group
NP_001064650Oryza sativa Japonica Group
NP_001064654Oryza sativa Japonica Group
NP_001064655Oryza sativa Japonica Group
NP_001064656Oryza sativa Japonica Group
NP_001064657Oryza sativa Japonica Group
30072.m000949Ricinus communis
175298Chlamydomonas reinhardtii
NP_001064642Oryza sativa Japonica Group
NP_001064641Oryza sativa Japonica Group
NP_001064640Oryza sativa Japonica Group
NP_001064671Oryza sativa Japonica Group
NP_001068302Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:2.60.210.103.899998617952183E-730174IPR013322TRAF-type
SuperFamilySSF495999.4E-3830169IPR008974TRAF-like
PROSITEPS501440.033167IPR002083MATH
SMARTSM000611.5999988934925165E-1138150IPR002083MATH
PfamPF009170.001900000000000000251167IPR002083MATH
Gene3DG3DSA:3.30.710.102.3000044072653926E-27174308IPR011333BTB/POZ fold
SuperFamilySSF546953.2E-31178311IPR011333BTB/POZ fold
PfamPF006518.100000000000005E-22195310IPR013069BTB/POZ
SMARTSM002252.8000050426110004E-25203312IPR000210BTB/POZ-like
PROSITEPS500970.0203270IPR000210BTB/POZ-like
PANTHERPTHR232303.1000130737018863E-88213368IPR013089Kelch related