You are querying gene by "AT5G17690".

Locus: AT5G17690 Alias: LHP1

Hormone Evidence Function category Gene Description PMID
GibberellinMutant Hormone signal transduction Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state. 19228333

Basic gene information ( show / hide contents )

Locus AT5G17690 | Chromosome: 5 | Strand: -
Description Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state.
Alias
LHP1( alias )
TFL2( alias )
Gene model
AT5G17690.1 | From: 5827173 | To: 5829684
Sequence
AT5G17690.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 16972870
methylated histone residue binding PMID: 17542647
cellular_component
euchromatin PMID: 16244868
nuclear heterochromatin PMID: 16361394
biological_process
chromatin silencing PMID: 16549797
shoot morphogenesis PMID: 9611176
vernalization response PMID: 16682972
negative regulation of flower development PMID: 9611176
multidimensional cell growth PMID: 9611176
photoperiodism PMID: 9611176
negative regulation of gene expression, epigenetic PMID: 16549797
establishment and/or maintenance of chromatin architecture PMID: 16244868
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   gibberellin   ]

Genotype PMID Type
lhp1 19228333 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT5G17690.1 
length: 1816 
miRNA : ath-miR414
length: 21 
 
mfe: -32.3 kcal/mol 
p-value: 0.000302 
 
position  379 
target 5' G     A              U 
           GAUGA GAUGAUGGAGGUGA  
           CUGCU CUACUACUUCUACU  
miRNA  3' A     A                
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12398
AccessionTaxon
NP_197271 ( AT5G17690 )Arabidopsis thaliana
NP_001064351Oryza sativa Japonica Group
30148.m001410Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF541602.4e-18104167IPR016197Chromo domain-like
PRINTSPR005044.7e-05105113IPR017984Chromo domain subgroup
SMARTSM002983.7e-14107160IPR000953Chromo domain
PfamPF003859.7e-15108156IPR000953Chromo domain
PROSITEPS5001316.177108156IPR000953Chromo domain
PRINTSPR005044.7e-05118132IPR017984Chromo domain subgroup
PROSITEPS00598NA125145IPR000953Chromo domain
PRINTSPR005044.7e-05133145IPR017984Chromo domain subgroup
SMARTSM003005.5e-10372444IPR018125Chromo shadow, subgroup